Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAACCCTAATTTCGGAAAGATCGGCGATGACTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaattcttcctttgttttctctgacttcgacgcgcacatgcgcgtcgatgtgcgtgatttcgatgattccttttttatacgattgcttgcttcta...

Basic information

species Glycine max
transcript GLYMA13G36690.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G36690.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g11110.1 (Oryza sativa), 5'ss of exon 1
TAAACCCTAATTTCGGAAAGATCGGCGATGACTGCCTCCAAGGATC---GCGAGAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaattcttcctttgttttctctgacttcgacgcgcacatgcgcgtcgatgtgcgtgatttcgatgattccttttttatacgat-tgcttgcttcta
  | ||      || |   ||||         |  | ||| ||  |   ||||  || |||||||||| ||||| |||||||||||||||||||| ||||| |||     || |  ||    |     ||  |  |  | ||  | | |    |  ||  |||| ||  |    ||    | || | |  | ||  || ||   
-CAGCCTCG--CTCAGCTCGATCTCTCTCTCGTCTCGCCATGGCCCCCAGCGACGACCTCGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGATACGACGgtacgcgatcccccccggctccctcctcccccctgc-cgttcctccctacctctgctcgtgcttgggggttttgtggtgttgtgctgtgtgtgtgttttgg

upper sequence: GLYMA13G36690.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S201_25V6.1 (Physcomitrella patens), 5'ss of exon 1
TAAACCCTAATTTCGGAAAGATCGGC---GATGACTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaattcttcctttgttttctctgacttcgacgcgcacatgcgcgtcgatgtgcgtgatttcgatgattccttttttatacgattgcttgcttcta-------
       |   ||  | ||| |||||   ||||| |||    ||||| ||||||| ||  || ||||| ||||| |||||||||||||| ||||||||||| |||   |  | |||  ||| |||   |||   |    | |    |  |  | | | ||  |  ||| | |  ||  ||||||  | ||| ||  |||| |        
---GGAGTTGCTTGCGCAAGTTCGGCCAGGATGAGTGCGGAGAAGGAGCGCGAGAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGACGgt---acgtgcttaattt-tttgtcctggtgt--gtgtgtttgtttgttttgttttgttttgttttgttttttttttttttcca-gatcgcgagcttgttgtttgaa

upper sequence: GLYMA13G36690.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S46_127V6.1 (Physcomitrella patens), 5'ss of exon 1
---TAAACCCTAATTTCGGAAAGATCGGCGATGACTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgttt-caaattcttcctttgttttctc-tgacttcgacgcgcacatgcgcgtcgatgtgcgtgatttcgatgattccttttttatacgattgcttgcttcta
         | | | |  |  ||  |   ||||| | |    ||||| ||||||| ||  || ||||| ||||| |||||||||||||| ||||||||||| ||| |     |     |  | | ||  | ||  ||         |||  || | | | |  |||   |   |      || ||| |   |||  ||  |  ||
TGTCGTGGACGAGTGT--GCTAGGCCAA-GATGAGTACGGAGAAGGAGCGCGAGAGCTATGTGTACATGGCCAAGCTCGCCGAGCAGGCGGAGCGTTACGATGgtgtgtgtgtgtgctcgatatgttaacatgtttttcttctttccattagc-ttggtttttgtggagtttttcgggagttatttgt-ttatttattattatta

upper sequence: GLYMA13G36690.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S348_9V6.1 (Physcomitrella patens), 5'ss of exon 1
-TAAACCCTAATTTCGGAAAGATCGGCGATGACTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgt---ttcaaattcttcctttgttttctctgacttcgacgcgcacatgcgcgtcgatgtgcgtgatttcgatgattcctttttt--atacgattgc-ttgcttcta
        |  |   |    |  || | |||| | |    ||||| ||||||| ||  || || || || ||||||||||||||||| ||||||||||| |||   | ||  | |      | | ||||     || |  |      |     ||  | |    | || |  |  |  || ||||  |   ||| || ||| ||   
GCGTGTGGTGGTGCAGTTCGGGGCGAC-ATGAGTACGGAGAAGGAGCGCGAGAGCTATGTGTATATGGCGAAACTCGCCGAGCAGGCGGAGCGTTACGATGgtgcgtgcatgtgcgcgtgctttgttcttgatttttggagttggagtttatttccttat---cgtttcctgtcgtcgctgttttcgaggggatggcgttgttt---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208211464|gb|GE014023.1|GE014023
EST:     TCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: TCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|20207833|gb|BQ133922.1|BQ133922
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|151407823|gb|EV277638.1|EV277638
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|213605462|gb|DB966955.1|DB966955
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|193647815|gb|FK594400.1|FK594400
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|298166008|gb|HO008979.1|HO008979
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|208218232|gb|GE018756.1|GE018756
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGGATCAATGAAGAACG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACG
EST: gi|298198708|gb|HO042071.1|HO042071
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|208289545|gb|GE088484.1|GE088484
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|209720746|gb|BW657748.1|BW657748
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGGAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|151411607|gb|EV281418.1|EV281418
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|298198967|gb|HO042330.1|HO042330
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|13789247|gb|BG651838.1|BG651838
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGTTAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|151403064|gb|EV272874.1|EV272874
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGTACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|207769120|gb|GD741476.1|GD741476
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|213600585|gb|DB960133.1|DB960133
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|209719364|gb|BW674442.1|BW674442
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|209725077|gb|BW659785.1|BW659785
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|15813608|gb|BI785883.1|BI785883
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|4397637|gb|AI496634.1|AI496634
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|298167729|gb|HO012992.1|HO012992
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGTCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGGGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|21602661|gb|BQ612992.1|BQ612992
EST:     CGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: CGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|209729013|gb|BW651765.1|BW651765
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAACCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|17963890|gb|BM270633.1|BM270633
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|13311577|gb|BG405219.1|BG405219
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|207824984|gb|GD797186.1|GD797186
EST:     TCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: TCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|12690801|gb|BG157137.1|BG157137
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         A-AAGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|209712342|gb|BW671192.1|BW671192
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|213602554|gb|DB968864.1|DB968864
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|209721040|gb|BW666297.1|BW666297
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|209724785|gb|BW672568.1|BW672568
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|298198678|gb|HO042041.1|HO042041
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|6566303|gb|AW233976.1|AW233976
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGATCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|209712185|gb|BW681391.1|BW681391
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|208131037|gb|GD928614.1|GD928614
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|207825180|gb|GD795071.1|GD795071
EST:     TCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: TCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|209709689|gb|BW668225.1|BW668225
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|208050451|gb|GD847662.1|GD847662
EST:     TCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: TCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|213607166|gb|DB967015.1|DB967015
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAACCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|209703001|gb|BW656058.1|BW656058
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|298178495|gb|HO024230.1|HO024230
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAACCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|23726510|gb|BU761249.1|BU761249
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|16348539|gb|BI974134.1|BI974134
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|209719931|gb|BW666014.1|BW666014
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|208292069|gb|GE095921.1|GE095921
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|208318549|gb|GE112850.1|GE112850
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|27427519|gb|CA939039.1|CA939039
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|213598761|gb|DB968232.1|DB968232
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|208122562|gb|GD922708.1|GD922708
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGTCGTAATCTCGACGTTGAACTGAC
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTG-CG-AATCTCGACGTTGAACTGAC
EST: gi|298169360|gb|HO020720.1|HO020720
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|209705111|gb|BW653334.1|BW653334
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|193466398|gb|FK431623.1|FK431623
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTCGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|192301450|gb|FG998414.1|FG998414
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|21285870|gb|BQ473741.1|BQ473741
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|6567114|gb|AW234741.1|AW234741
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|298183717|gb|HO028930.1|HO028930
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|24136596|gb|BU927106.1|BU927106
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|9258319|gb|BE346466.1|BE346466
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|9258572|gb|BE346719.1|BE346719
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|151403934|gb|EV273744.1|EV273744
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|298178645|gb|HO024380.1|HO024380
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|254316526|gb|GR828063.1|GR828063
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|192304318|gb|FG993574.1|FG993574
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCATTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
EST: gi|208239663|gb|GE039155.1|GE039155
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGT
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGT
EST: gi|8669351|gb|BE190458.1|BE190458
EST:     GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAG                         AGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG
genomic: GAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaatt ... tttgtggcagAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAACCCTAATTTCGGAAAGATCGGCGATGACTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGgtttcaaattcttcctttgttttctctgacttcgacgcgcacatgcgcgtcgatgtgcgtgatttcgatgattccttttttatacgattgcttgcttcta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG