Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCCAAGCAAACATCATATATCATATCAGCAAGGCTAACCCTAAATCGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcggatcctcttgtatcttctccgtagcatgcttcgttattttgcagaatctgaaatttagttatccatgcttagtttaagctatgttccaat...

Basic information

species Glycine max
transcript GLYMA13G35590.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185668|gb|HO030881.1|HO030881
EST:     ACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: ACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|209721139|gb|BW665696.1|BW665696
EST:     GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|213588681|gb|DB957689.1|DB957689
EST:     GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|6502066|gb|AW203439.1|AW203439
EST:     GAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|213611688|gb|DB969076.1|DB969076
EST:     GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|192305243|gb|FG993981.1|FG993981
EST:     GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|209711827|gb|BW674087.1|BW674087
EST:     GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|213608827|gb|DB957191.1|DB957191
EST:     ACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: ACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|298195414|gb|HO039245.1|HO039245
EST:     CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|254332683|gb|GR844053.1|GR844053
EST:     CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|193347242|gb|FK311462.1|FK311462
EST:     CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|8284697|gb|BE022239.1|BE022239
EST:     GGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|192318939|gb|FK006835.1|FK006835
EST:     CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|11412751|gb|BF424762.1|BF424762
EST:     GTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|9440322|gb|BE440829.1|BE440829
EST:     AAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: AAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|192316655|gb|FK006834.1|FK006834
EST:     CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|213614228|gb|DB956812.1|DB956812
EST:     GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|213601355|gb|DB956675.1|DB956675
EST:     GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: GCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|298183338|gb|HO028551.1|HO028551
EST:     CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: CGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|254319372|gb|GR828992.1|GR828992
EST:     CCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: CCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|193374315|gb|FK339295.1|FK339295
EST:     TCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: TCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
EST: gi|298185362|gb|HO030575.1|HO030575
EST:     ACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATG                         GTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC
genomic: ACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcg ... catattcaagGTGTACGTCAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCCAAGCAAACATCATATATCATATCAGCAAGGCTAACCCTAAATCGCTCTTACTCTCTTTCGTCAGTTTCGGGGGAAGAGATCCAGCAGCAATGgtgagtttcggatcctcttgtatcttctccgtagcatgcttcgttattttgcagaatctgaaatttagttatccatgcttagtttaagctatgttccaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttctcc