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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGTTCAGTATCTGTGCCGCAAGGTCGCTGGCCACCATTTCTCTCTTCCAATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatcaaatcgctcacccatctccatttttttttaagttaattactttgttctaaattgaatagatttgattgattaattttgcag

Basic information

species Glycine max
transcript GLYMA13G35550.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G35550.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S140_93V6.1 (Physcomitrella patens), 5'ss of exon 1
CTCGTTCAGTATCTGTGCCGCAAGGTCGCTGGCCACCATTTCTCTCTTCCAATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatcaaatcgctcacccatctccatttttttttaagttaattactttgttctaaattg-aatagatttgattgattaattttgcag----------------
 |  | || || ||||| || |||| ||     ||    ||| |  ||||  ||||||| ||||||||| |||||||||||||||| ||||  |||||  |||  |  | |     || || || |    ||||| | |||| |||  | |  |      | | |||  | ||| |     | | | ||||                
GTGCTGCATTACCTGTGTCGGAAGGCCGAGTCTCATGTCTTCGCAATTCCTGTCATTGCGGAAATTGACCTGTACAAGTTCGACCCTTGGGACCTTCCTGgta--tgcctaccttgtc-cctattt----tttttgtgaagtcaataccatcatgagggttagtaatttaattgttcctacagtatggcagtaaattcaaagcataa

upper sequence: GLYMA13G35550.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S5_359V6.1 (Physcomitrella patens), 5'ss of exon 1
CTCGTTCAGTATCTGTGCCGCAAGGTCGCTGGCCACCATTTCTCTCTTCCAATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatcaaatcgctcacccatctccatttttttttaagttaatta----ctttgttctaaattgaatagatttgattg-----attaattttgcag--
 |  |||| || ||||| || || | ||      |    ||| |  ||||  | ||||||||||||||| |||| ||||||||||| ||||  |||||  ||| | || |  |   | | |  | ||  ||  || |||  || || |    | || ||      || ||||     |  |     | ||| ||    |  
GTTCTTCATTACCTGTGTCGGAAAGCCGAGTCTAAGGTGTTCGCGATTCCTGTTATTGCCGAAATTGACCTGTATAAGTTCGACCCTTGGGACCTTCCTGgta-tgataacctttattaactttatcttttaattgttactttcatcatgagcattattaattgctgcatagccacaacagggagcagtaaattcaacgtg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254339905|gb|GR858030.1|GR858030
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|37997645|gb|CF809234.1|CF809234
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|151400077|gb|EV269891.1|EV269891
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|13481525|gb|BG510868.1|BG510868
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|254316594|gb|GR828131.1|GR828131
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|14008840|gb|BG725444.1|BG725444
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|192295101|gb|FG986820.1|FG986820
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|22541207|gb|BU091050.1|BU091050
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|254343208|gb|GR856912.1|GR856912
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
EST: gi|37996921|gb|CF808510.1|CF808510
EST:     AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA
genomic: AATCATTGCCGAAATTGACTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattatca ... aattttgcagGTAAAGCGATTTTCGGTGAAAAAGAGTGGTACTTTTTCAGCCCCAGAGACA