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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAGCTGTTGGGATGATGGCCCTTCATGATGCCCTCAGAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgacatgcttctctttcattctcttattctctctttctgtctttctgtctctaacttcaaaccataacctcttacctcaactgggtctttgtccatttctcacag

Basic information

species Glycine max
transcript GLYMA13G34980.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os11g25920.1 (Oryza sativa), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGATGCCCTCAGAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgacatgcttctctttcattctcttattctctctttctgtctttctgtctctaact-tcaaaccataacctcttacctcaactgggtctttgtccatttctcacag
|||| || |  ||||||||||| || || || |||||| | |  ||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||   | |  ||   | | |  |     |||    | ||  ||| || ||| |||| |||   |||  | |||  |   |  |  ||| | |              
AAGAGGCCGCCGGGATGATGGCTCTCCACGAGGCCCTCCGCAACGTCTGCCTCAACTCCGACTGGACTTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatg-tgtaccacttaattaattaccacccctcc---tatgaatttttgcctcaaactctcatctcatctcttctccctatatatatgtcgtcgaag-----------

upper sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G302293_T01 (Zea mays), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGATGCCCTCAGAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgacatgcttct--ctttcattctcttattctctctttctgt-ctttctgtctctaacttcaaaccataacctcttacctcaactgggtctttgtccatttctcacag
|||| || |  ||||||||||| || || || |||||| | |  ||||| ||| |||| |||||||| ||||| |||||||||||||| |||||||||||||||| || || | |  ||  |    | ||||||  |||  ||   || |||     | ||||||     | ||||     | ||    |                     
AAGAGGCCGCGGGGATGATGGCGCTCCACGAGGCCCTCCGCAACGTCTGCCTCGACTCGGACTGGACCTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtcacgcgtgtgcctccctgcttgttattccgtctagctaagctctctcagcttcacttcagttagttaccttggtgcacatgcag---------------------

upper sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G132251_T01 (Zea mays), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGATGCCCTCAGAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgacatgcttctctttcatt-ctcttattctctct---ttctgtctttctgtctctaacttcaaaccataacctcttacctcaactgggtctttgtccatttctcacag---------------------------------------------------------------------------------------
|||| || |  ||||||||||| || || || |||||| | |  ||||| |||| ||| |||||||| ||||| |||||||||||||| ||||||||||||||||  |||  |  || ||  |   |||||||  ||      | | |       |||   | ||  || ||| |    ||  |   ||  |   || ||   || | |                                                                                          
AAGAGGCCGCGGGGATGATGGCGCTCCACGAGGCCCTCCGCAACGTCTGCCTCAGCTCGGACTGGACGTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtgatgtgtgcctctccctgtccttattccgtccggacaccgacgaatgaactcgtccgtcctactatagctagcta--ttgtctttgctcttctctgcttgttattatgccgccgtctaagcccacaacacaagccccagtttgtcatcacaggcacagcgagtgatgactgtgtactatttccctgcatgcag

upper sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G53900.2 (Arabidopsis thaliana), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGATGCCCTCAGAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgacatgcttctctttcattctcttattctctctttctgtctttctgtctctaacttcaaaccataacctcttacctcaactgggtctttgtccatttctcacag
|||| ||||| || |||||||| |||||||| || || ||||| |||||| | ||||| ||||||| ||||||||||||||||||||||||||| || |||||   ||  ||||||| ||  ||||||  ||||||| |   ||  ||| |||||   |    ||| |       | || |     | | |  |              
AAGATGCTGTAGGAATGATGGCACTTCATGAAGCACTTAGAAGCGTCTGTTTTAACTCCGACTGGATTTACTCTGTCTTCTGGACCATTCGTCCCCGACCgta---cacacttctctctc--tctctttctctctctgttcatcaatctttctctgtttctttaccttttttatgttccactttctgatttcag--------------

upper sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G15240.2 (Arabidopsis thaliana), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGATGCCCTCAGAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgacatgcttctctttcattctcttattctctctttctgtctttctgtctctaacttcaaaccataacctcttacctcaactgggtctttgtccatttctcacag
|||||||| | |||||| |||| || || || ||||| ||||  || ||||||||| | |||||||||||||||||||||||| |||| ||||| || ||||| |   |   |||||      |||   | |||||||| | | ||  || |   | ||   | | ||   ||||   |  |||   |||||| |   ||  |||   
AAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGTCTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCgtacg---tatctctctc-----ctcagctcctctcttttttttttattgacatgatct---atctat---ctctcctcaaaacgatgtcttt-tttgttcttcag--

upper sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGATGCCCTCAGAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgacatgcttctctttcattctcttattctctctttctgtctttctgtctctaacttcaaaccataacctcttacctcaactgggtctttgtccatttctcacag
||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||       || ||||| | | ||| |||| ||| ||||||| |   | | |   ||     | | |  | ||  |||||  |||| | | ||||||| |  |||
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatg-----tctccctttc-tacactttttctatctatctgtctgtgattttttggtttt----cctgatatttt--ctcaaacgggtatct-tccattt-ttgcag

upper sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ05904 (Selaginella moellendorffii), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGATGCCCTCAGAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgacatgcttctctttcattctcttattctctctttctgtctttctgtctctaacttcaaaccataacctcttacctca--actgggt--ctttgtccatttctcacag-------------
  ||||   | |   | ||||| || || || || ||  | |  || ||| ||| |||||| |||||||||||||||||||||||||| ||||| || ||||| ||      || | || |  | | |  |||||||  || ||| |||  ||||  ||     ||      | | ||  ||   ||  ||  |||  ||   |||     |             
GGGAAGTGATGGCAGTCATGGCGCTGCACGAAGCGCTGCGGAATGTGTGTATCAGCTCAGATTGGACTTACTCTGTCTTCTGGACCATCCGTCCCCGACCgtaagaagcagctcaccttaagcccccttctctctctcactctctctctcgctctctctcttctcctcgttgtttcactgcattgctacgttgcttgctctgattcatctggctttcatctccag

upper sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ26828 (Selaginella moellendorffii), 5'ss of exon 1
AAGAAGCTGTTGGGATGATGGCCCTTCATGATGCCCTCAGAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgacatgcttctctttcattctcttattctctctttctgtctttctgtctctaact---tcaaaccataacctc-ttacctcaactgggtc-tttgtccatttctcacag
  ||||   | |   | ||||| || || || || ||  | |  || ||| ||| |||||| |||||||||||||||||||||||||| ||||| || ||||| ||      || | || |  | | |  ||||||| ||| ||| |||    ||   |   |||   |||  |  | || | |   |||  || | || |  |      |||
GGGAAGTGATGGCAGTCATGGCGCTGCACGAAGCGCTGCGGAATGTGTGTATCAGCTCAGATTGGACTTACTCTGTCTTCTGGACCATCCGTCCCCGACCgtaagaggcagctcgccttaagcccccttctctctctctctctctctcttctcctcgttgtttcactgcattgctacgttgcttgctctgattcatctggctttcatctccag