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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTTCAGAGAGAGACCCTTCACAACATGGCAAAAACGAGGCCAGGCAGAAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaagaaacccttttgccttttcagctatccagttgcgtaaacggcctcaaaatcgtttcttttgctgagggaaggggagggaatggtttgaaaccatgtgggtgttgcgatgattagtgaaaggtgtgttcttttttttgtgttctgcag

Basic information

species Glycine max
transcript GLYMA13G34740.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G34740.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 1
GAGTTTCAGAGAGAGACCCTTCACAAC-ATGGCAAAAACGAGGCCAGGCAGAAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaagaaacccttttgccttttcagctatccagttgcgtaaacggcctcaaaatcgtttcttttgctgagggaaggggagggaatggtttgaaaccatgtgggtgttgcgatgattagtgaaaggtgtgttcttttttttgtgttctgcag
 |  || ||  | ||| || |  |    ||||| || |||||||| || | || |||||||||||| |||||||||| ||||||||||||| | || ||||||||   |     ||      |      | | |     | ||   |||  | ||   |||| ||    ||  ||   |    | ||                                                                       
-ATCTTAAGGAAAAGAACCCTAGCGGTGATGGCGAAGACGAGGCCTGGGAAAAGAGACTTGGATTCGTACACCATCAAAGGCACCAACAAGGTGGTGAGAGgtaaaatcggtgtacaaaagcgatgagactgttgcgttggtgttcaaaacggct--gaatcattgtggtttttggatgttttgcag-----------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193429112|gb|FK392338.1|FK392338
EST:     AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAG                         CTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCG
genomic: AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaa ... tgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCG
EST: gi|298197820|gb|HO039359.1|HO039359
EST:     AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAG                         CTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACG
genomic: AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaa ... tgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACG
EST: gi|213617855|gb|DB967273.1|DB967273
EST:     AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAG                         CTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACG
genomic: AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaa ... tgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACG
EST: gi|192317077|gb|FK007844.1|FK007844
EST:     AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAG                         CTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACG
genomic: AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaa ... tgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACGAGCAAGCCACCGTACG