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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTTCAGAGAGAGACCCTTCACAACATGGCAAAAACGAGGCCAGGCAGAAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaagaaacccttttgccttttcagctatccagttgcgtaaacggcctcaaaatcgtttcttttgctgagggaaggggagggaatggtttgaaaccatgtgggtgttgcgatgattag

Basic information

species Glycine max
transcript GLYMA13G34740.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G34740.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 1
GAGTTTCAGAGAGAGACCCTTCACAAC-ATGGCAAAAACGAGGCCAGGCAGAAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaagaaacccttttgccttttcagctatccagttgcgtaaacggcctcaaaatcgtttcttttgctgagggaaggggagggaatggtttgaaaccatgtgggtgttgcgatgattag
 |  || ||  | ||| || |  |    ||||| || |||||||| || | || |||||||||||| |||||||||| ||||||||||||| | || ||||||||   |     ||      |      | | |     | ||   |||  | ||   |||| ||    ||  ||   |    | ||                                      
-ATCTTAAGGAAAAGAACCCTAGCGGTGATGGCGAAGACGAGGCCTGGGAAAAGAGACTTGGATTCGTACACCATCAAAGGCACCAACAAGGTGGTGAGAGgtaaaatcggtgtacaaaagcgatgagactgttgcgttggtgttcaaaacggct--gaatcattgtggtttttggatgttttgcag--------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151394164|gb|EV264035.1|EV264035
EST:     AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAG                         TGAAAGGTGTGTTCNNNNNNNNGTGTTCTGCAGCTGGGGACTGTGTGCTGA
genomic: AAAAGACTTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaa ... cgatgattagTGAAAGGTGTGTTCTTTTTTTTGTGTTCTGCAGCTGGGGACTGTGTGCTGA