Sequence
atgc intronic sequence ATGC exonic sequenceCTCAAGAAAGGACCATGGACAACCGAGGAGGACCAGAAACTCATTGATTACATTCAGAAACATGGATATGGCAATTGGAGGACACTCCCAAAGAATGCTGgtatgtcaccaaattaaactaaacttaacaaaatggctctctttttttttttttttttgttaatttcaactaataatggttaattttggttcattag
Basic information
species | Glycine max |
transcript | GLYMA13G32090.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G32090.1 (Glycine max), 5'ss of exon 1
lower sequence: AT4G05100.1 (Arabidopsis thaliana), 5'ss of exon 1
CTCAAGAAAGGACCATGGACAACCGAGGAGGACCAGAAACTCATTGATTACATTCAGAAACATGGATATGGCAATTGGAGGACACTCCCAAAGAATGCTGgtatgtcaccaaattaaactaaacttaacaaaatggctctctttttttttttttttttgttaatttcaactaataatggttaattttggttcattag
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CTCAAGAAAGGACCATGGACTCCTGAGGAGGATCAAAAGCTCATTGATTATATCAATATACATGGTTATGGAAATTGGAGAACTCTTCCCAAGAATGCTGgttagtatacgtatcttcattattacattttaatcatact-ttttttattcgtgaattgtctttttaaagttttgcttg--aatcttgact--atag
upper sequence: GLYMA13G32090.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0203g00070.t01 (Vitis vinifera), 5'ss of exon 1
CTCAAGAAAGGACCATGGACAACCGAGGAGGACCAGAAACTCATTGATTACATTCAGAAACATGGATATGGCAATTGGAGGACACTCCCAAAGAATGCTGgtatgtcaccaaattaaactaaacttaacaaaatggctctctttttttttttttttttgttaatttcaactaataatggttaattttggttcattag
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CTCAAAAAGGGACCCTGGACTCCTGAAGAGGATCAGAAACTCATTGATTATATCCAGAAAAATGGCTATGGAAACTGGAGGACACTTCCTAAAAATGCCGgtacgtctgccaccaatgattgagtggcctttttg--ttcaggtttgaatatttttttatgggcttagatt--taatgggtg-ttctgcctc--tagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19271091|gb|BM887347.1|BM887347EST: CATTCAGAAACATGGATATGGCAATTGGAGGACACTCCCAAAGAATGCTG GGTTGCAAAGGTGTGGAAAGAGTTGCCGTCTCCGTTGGACAAACTATCTAC
genomic: CATTCAGAAACATGGATATGGCAATTGGAGGACACTCCCAAAGAATGCTGgtatgtcacc ... ggttcattagGGTTGCAAAGGTGTGGAAAGAGTTGCCGTCTCCGTTGGACAAACTATCTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCAAGAAAGGACCATGGACAACCGAGGAGGACCAGAAACTCATTGATTACATTCAGAAACATGGATATGGCAATTGGAGGACACTCCCAAAGAATGCTGgtatgtcaccaaattaaactaaacttaacaaaatggctctctttttttttttttttttgttaatttcaactaataatggttaattttggttcattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG