1 5' 3' | 2 5' 3' | 3 5' 3' |
TTCGGCTGCCATTGAAAGAAACTGTTGAATCGCGTCGATTAAGgtgattttcgtttcgtgctttcacttttgaactcctttcaattttcctttggtttttcgtaaatcaagtttgctttttacttcctttcgaacccgaaatt...
species | Glycine max |
transcript | GLYMA13G31920.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTGAAAGAAACTGTTGAATCGCGTCGATTAAG GTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATGATAGATATEST: gi|207847778|gb|GD818747.1|GD818747
genomic: ATTGAAAGAAACTGTTGAATCGCGTCGATTAAGgtgattttcg ... tcttttgcagGTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATGATAGATAT
EST: GCCATTGAAAGAAACTGTTGAATCGCGTCGATTAAG GTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATGATAGATATEST: gi|192293831|gb|FG986040.1|FG986040
genomic: GCCATTGAAAGAAACTGTTGAATCGCGTCGATTAAGgtgattttcg ... tcttttgcagGTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATGATAGATAT
EST: ATTGAAAGAAACTGTTGAATCGCGTCGATTAAG GTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATGATAGATATEST: gi|193320686|gb|FK286529.1|FK286529
genomic: ATTGAAAGAAACTGTTGAATCGCGTCGATTAAGgtgattttcg ... tcttttgcagGTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATGATAGATAT
EST: ATTGAAAGAAACTGTTGAATCGCGTCGATTAAG GTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATGATAGATATEST: gi|193344074|gb|FK311974.1|FK311974
genomic: ATTGAAAGAAACTGTTGAATCGCGTCGATTAAGgtgattttcg ... tcttttgcagGTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATGATAGATAT
EST: GAAAGAAACTGTTGAATCGCGTCGATTAAG GTTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATGGATAGATEST: gi|254322281|gb|GR837695.1|GR837695
genomic: GAAAGAAACTGTTGAATCGCGTCGATTAAGgtgattttcg ... tcttttgcagG-TTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAAT-GATAGAT
EST: GTTGAATCGCGTCGATTAAG GTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATGATAGATATEST: gi|193432420|gb|FK394232.1|FK394232
genomic: GTTGAATCGCGTCGATTAAGgtgattttcg ... tcttttgcagGTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATGATAGATAT
EST: ATTGAAAGAAACTGTTGAATCGCGTCGATTAAG GTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATAGATAGATAEST: gi|193334566|gb|FK301772.1|FK301772
genomic: ATTGAAAGAAACTGTTGAATCGCGTCGATTAAGgtgattttcg ... tcttttgcagGTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAAT-GATAGATA
EST: ATTGAAAGAAACTGTTGAATCGCGTCGATTAAG GTTTTGAGATTTCTAGGCTTTCATCTCAGACTAGTGAAAAAATGATAGATAEST: gi|192324572|gb|FK016463.1|FK016463
genomic: ATTGAAAGAAACTGTTGAATCGCGTCGATTAAGgtgattttcg ... tcttttgcagGTTTTGAGATTTCTAGGCTTTCATCTCAGAC-AGTGAAAAAATGATAGATA
EST: GCCATTGAAAGAAACTGTTGAATCGCGTCGATTAAG GTTTTGAGATTTCTAGGCTTTTATCTCAGACAGTGAAAAAATGATAGATATEST: gi|192303741|gb|FG996007.1|FG996007
genomic: GCCATTGAAAGAAACTGTTGAATCGCGTCGATTAAGgtgattttcg ... tcttttgcagGTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATGATAGATAT
EST: TTGAATCGCGTCGATTAAG GTTATGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATGATAGATATEST: gi|208178231|gb|GD975776.1|GD975776
genomic: TTGAATCGCGTCGATTAAGgtgattttcg ... tcttttgcagGTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATGATAGATAT
EST: GCCATTGAAAGAAACTGTTGAATCGCGTCGATTAAG GTTTTGAGATTTCTAGGCTCTCATCTCAGACAGTGAAAAAATGATAGATAT
genomic: GCCATTGAAAGAAACTGTTGAATCGCGTCGATTAAGgtgattttcg ... tcttttgcagGTTTTGAGATTTCTAGGCTTTCATCTCAGACAGTGAAAAAATGATAGATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGGCTGCCATTGAAAGAAACTGTTGAATCGCGTCGATTAAGgtgattttcgtttcgtgctttcacttttgaactcctttcaattttcctttggtttttcgtaaatcaagtttgctttttacttcctttcgaacccgaaatt
- - - - - - - AAAGAA
- - - - - - - AAGAAA