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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTCGTGTGTCGTTTAGGGCTAGAAATGGGGTTTAAGTGGGTGCACTGATGTCATTGTTCTTGCTTGAGATTCGTCAACTTGCAGAAATCGAGGCAATGgtatttgactctctctctctctagctttttcctttgtggatggtgaatacatatttaattagtttaattttaatgtcggtggtgcaaaggatctaaaatt...

Basic information

species Glycine max
transcript GLYMA13G31720.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193384825|gb|FK353183.1|FK353183
EST:     CGTCAACTTGCAGAAATCGAGGCAATG                         GCTGCATCTAAGAAACTGATAACAAGAGAAGAGTGGGAGAAGAAGCTTAGT
genomic: CGTCAACTTGCAGAAATCGAGGCAATGgtatttgact ... ttgtgtgaagGCTGCATCTAAGAAACTGATAACAAGAGAAGAGTGGGAGAAGAAGCTTAGT
EST: gi|193661338|gb|FK603580.1|FK603580
EST:     TGTCATTGTTCTTGCTTGAGATTCGTCAACTTGCAGAAATCGAGGCAATG                         GCTGCATCTAAGAAACTGATAACAAGAGAAGAGTGGGANAAGAAGCTTAGT
genomic: TGTCATTGTTCTTGCTTGAGATTCGTCAACTTGCAGAAATCGAGGCAATGgtatttgact ... ttgtgtgaagGCTGCATCTAAGAAACTGATAACAAGAGAAGAGTGGGAGAAGAAGCTTAGT
EST: gi|298195085|gb|HO043613.1|HO043613
EST:     TGTCATTGCTCTTGCTTGAGATTCGTCAACTTGCAGAAATCGAGGCAATG                         GCTGCATCTAAGAAACTGATAACAAGAGAAGAGTGGGAGAAGAAGCTTAGT
genomic: TGTCATTGTTCTTGCTTGAGATTCGTCAACTTGCAGAAATCGAGGCAATGgtatttgact ... ttgtgtgaagGCTGCATCTAAGAAACTGATAACAAGAGAAGAGTGGGAGAAGAAGCTTAGT
EST: gi|21285801|gb|BQ473672.1|BQ473672
EST:     TGTCATTGTTCTTGCTTGAGATTCGTCAACTTGCAGAAATCGAGGCAATG                         GCTGCATCTAAGAAACTGATAACAAGAGAAGAGTGGGAGAAGAAGCTTAGT
genomic: TGTCATTGTTCTTGCTTGAGATTCGTCAACTTGCAGAAATCGAGGCAATGgtatttgact ... ttgtgtgaagGCTGCATCTAAGAAACTGATAACAAGAGAAGAGTGGGAGAAGAAGCTTAGT
EST: gi|18039280|gb|BM307574.1|BM307574
EST:     TGTCATTGTTCTTGCTTGAGATTCGTCAACTTGCAGAAATCGAGGCAATG                         GCTGCATCTAAGAAACTGATAACAAGAGAAGAGTGGGAGAAGAAGCTTAGT
genomic: TGTCATTGTTCTTGCTTGAGATTCGTCAACTTGCAGAAATCGAGGCAATGgtatttgact ... ttgtgtgaagGCTGCATCTAAGAAACTGATAACAAGAGAAGAGTGGGAGAAGAAGCTTAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCTCGTGTGTCGTTTAGGGCTAGAAATGGGGTTTAAGTGGGTGCACTGATGTCATTGTTCTTGCTTGAGATTCGTCAACTTGCAGAAATCGAGGCAATGgtatttgactctctctctctctagctttttcctttgtggatggtgaatacatatttaattagtttaattttaatgtcggtggtgcaaaggatctaaaatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc