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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTTCACCGCGCACCACACTGAGAGGAAGAGGGAGTGAGAGAGAGTGTTCTTCGTTTGCTACCTTCTCCCAGAAATGGTTACGTTCAGGgtgcgtaagattcacgccattctgtgtttgatttcatcttccttcgattatgatttttacgaggtagtatgtgttttgtgtctttgcag

Basic information

species Glycine max
transcript GLYMA13G28830.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14991155|gb|BI316828.1|BI316828
EST:     AGAGAGTGTTCTTCGTTTGTTACCTTCTCTCAGAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTCGGGAGGGCTCTCCCAACGGAAGCAGATCAG
genomic: AGAGAGTGTTCTTCGTTTGCTACCTTCTCCCAGAAATGGTTACGTTCAGGgtgcgtaaga ... gtctttgcagTTTCACCAGTACCAGGTGGTCGGGAGGGCTCTCCCAACGGAAGCAGATCAG
EST: gi|193389576|gb|FK357177.1|FK357177
EST:     AGAGAGTGTTCTTCGTTTGCTACCTTCTCCCAGAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTCGGGAGGGCTCTCCCAACGGAAGCAGATCAG
genomic: AGAGAGTGTTCTTCGTTTGCTACCTTCTCCCAGAAATGGTTACGTTCAGGgtgcgtaaga ... gtctttgcagTTTCACCAGTACCAGGTGGTCGGGAGGGCTCTCCCAACGGAAGCAGATCAG
EST: gi|4395921|gb|AI494918.1|AI494918
EST:     AGAGAGTGTTCTTCGTTTGCTACCTTCTCCCAGAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTCGGGAGGGCTCTCCCAACGGAAGCAGATCAG
genomic: AGAGAGTGTTCTTCGTTTGCTACCTTCTCCCAGAAATGGTTACGTTCAGGgtgcgtaaga ... gtctttgcagTTTCACCAGTACCAGGTGGTCGGGAGGGCTCTCCCAACGGAAGCAGATCAG
EST: gi|207825851|gb|GD801034.1|GD801034
EST:     AGAGAGTGTTCTTCGTTTGCTACCTTCTCCCAGAAATGGTTACGTTCAGG                         TTTCACCAGTACCAGGTGGTCGGGAGGGCTCTCCCAACGGAAGCAGATCAG
genomic: AGAGAGTGTTCTTCGTTTGCTACCTTCTCCCAGAAATGGTTACGTTCAGGgtgcgtaaga ... gtctttgcagTTTCACCAGTACCAGGTGGTCGGGAGGGCTCTCCCAACGGAAGCAGATCAG