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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTTCCCTCAACCAAGGCATGAGCCACTATGTCCTTGTGGTTTATCGCCACGCTTTTGCCACCGCTGTCATCGCTCCTTTTGCCTTTATTTTTGAAAGgttcatagaataaacataaaccttagtgtcatcatcttgtcattttactctctcttttttttgttactataaagctttgcaaattaatgcttactcattgtttcaattttccag

Basic information

species Glycine max
transcript GLYMA13G25890.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G25890.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g58910.1 (Oryza sativa), 5'ss of exon 1
AGGTTTCCCTCAACCAAGGCATGAGCCACTATGTCCTTGTGGTTTATCGCCACGCTTTTGCCACCGCTGTCATCGCTCCTTTTGCCTTTATTTTTGAAAGgttcatagaataaacataaaccttagtgtcatcatcttgtcattttactctctcttttttttgttactataaagctttgcaaattaatgcttactcattgtttcaattttccag
|||| ||||||||||| |||||||||||||| || || || || || |||||||| || ||||||     |||||| || || ||| |  |  | || ||||    |    |  || |||  |||  |     || |||   |      ||    ||   |||| |||    |   |      ||  || ||  ||| ||     |  |  |||
AGGTCTCCCTCAACCACGGCATGAGCCACTACGTGCTCGTCGTCTACCGCCACGCCTTCGCCACCATCTCCATCGCACCCTTCGCCCTCCTCCTCGAGAGgtaataatttcatgcacaaa--ttaacggagcaatattgcagtaa----ctgatgttgcattgtaactgacgatggt-----gttggtgtttgatcaatg----gaaatggcag

upper sequence: GLYMA13G25890.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G042364_T02 (Zea mays), 5'ss of exon 1
AGGTTTCCCTCAACCAAGGCATGAGCCACTATGTCCTTGTGGTTTATCGCCACGCTTTTGCCACCGCTGTCATCGCTCCTTTTGCCTTTATTTTTGAAAGgttcatagaataaacataaaccttagtgtcatcatcttg-tcattttactctctcttttttttgttactataaagctttgcaaattaatgcttactcattgtttcaattttccag
|||| ||||||||||| |||||||||||||| || || || || || |||||||| ||||||||||     || || || |||||  | ||  |||| |||| |    | | |  | |   || ||| ||     || | ||  | |||   ||     |      |||    |    |  ||  |       |  ||                 
AGGTCTCCCTCAACCACGGCATGAGCCACTACGTGCTCGTCGTCTACCGCCACGCCTTTGCCACCGTCTCTATTGCACCGTTTGCTCTCATCCTTGAGAGgtact---actcactacagtactcagtttctcttgctcgatctgtataccagctagccatcactagacttgggaataatataatgtggcatgcatgcag----------------

upper sequence: GLYMA13G25890.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv13s0084g00090.t01 (Vitis vinifera), 5'ss of exon 1
AGGTTTCCCTCAACCAAGGCATGAGCCACTATGTCCTTGTGGTTTATCGCCACGCTTTTGCCACCGCTGTCATCGCTCCTTTTGCCTTTATTTTTGAAAGgttcatagaataaacataaaccttagtgtcatcatcttgtcattttactctctcttttttttgttactataaagctttgcaaattaatgcttactcattgtttcaattttccag
||||||| |||||||| || |||||||||||||| || ||||||||  | || || |||||||| || || || || ||||||||  |  |  |||| |||| |||   || |||  ||| |  |                |   ||   | ||||   |  ||| |     |  |||    |||  | | |  |   | |||  || ||||||
AGGTTTCTCTCAACCATGGGATGAGCCACTATGTTCTGGTGGTTTACAGGCATGCCTTTGCCACTGCCGTGATTGCGCCTTTTGCTATCTTCCTTGAGAGgtacattacatgaactgaaatcagaa---------------aaaatagcttttcttggatcagttccctcggaaatttattgattctttcatgtt---tttttttatgttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397034|gb|EV266907.1|EV266907
EST:     CACGCTTTTGCCACCGCTGTCATCGCTCCTTTTGCCTTTATTTTTGAAAG                         GAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATCCT
genomic: CACGCTTTTGCCACCGCTGTCATCGCTCCTTTTGCCTTTATTTTTGAAAGgttcatagaa ... aattttccagGAAAGGTCAACCGAAGATAACATTCCCAGTTTTCATGCAAATTTTTATCCT