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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCCAACAGAGCTTCTGCCTCTGTTATCAGTAACACGCTAGAAGACGACGCACAACCATCTTCCAATTTTGTTGGAACATGTCCTTACATGTGCCCAGgtaaacacttttttgttttttttggtcttaacctaaggataaagagatcttattaatcccgagttcggctccggccgaaaggtaattaaagtctggcccg...

Basic information

species Glycine max
transcript GLYMA13G25740.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193724245|gb|FK662293.1|FK662293
EST:     ATTTTGTTGGAACATGTCCTTACATGTGCCCAG                         AAAGAGAGAGGATCCAGCGTGAAAAACTGCGAGATTTGGCAATTTTTGAGA
genomic: ATTTTGTTGGAACATGTCCTTACATGTGCCCAGgtaaacactt ... ttatccacagAAAGAGAGAGGATCCAGCGTGAAAAACTGCGAGATTTGGCAATTTTTGAGA
EST: gi|213604413|gb|DB970617.1|DB970617
EST:     TGCACAGCCATCTTCCAATTTTGTTGGAACATGTCCTTACATGTGCCCAG                         AAAGAGAGAGGATCCAGCGTGAAAAACTGCGAGATTTGGCAATTTTTGAGA
genomic: CGCACAACCATCTTCCAATTTTGTTGGAACATGTCCTTACATGTGCCCAGgtaaacactt ... ttatccacagAAAGAGAGAGGATCCAGCGTGAAAAACTGCGAGATTTGGCAATTTTTGAGA
EST: gi|254324919|gb|GR834344.1|GR834344
EST:     CGCACAACCATCTTCCAATTTTGTTGGAACATGTCCTTACATGTGCCCAG                         AAAGAGAGAGGATCCAGCGTGAAAAACTGCGAGATTTGGCAATTTTTGAGA
genomic: CGCACAACCATCTTCCAATTTTGTTGGAACATGTCCTTACATGTGCCCAGgtaaacactt ... ttatccacagAAAGAGAGAGGATCCAGCGTGAAAAACTGCGAGATTTGGCAATTTTTGAGA
EST: gi|298189495|gb|HO037898.1|HO037898
EST:     CGCACGACCATCTTCCAATTTTGTTGGAACATGTCCTTACATGTGCCCAG                         AAAGAGAGAGGATCCAGCGTGAAAAACTGCGAGATTTGGCAATTTTTGAGA
genomic: CGCACAACCATCTTCCAATTTTGTTGGAACATGTCCTTACATGTGCCCAGgtaaacactt ... ttatccacagAAAGAGAGAGGATCCAGCGTGAAAAACTGCGAGATTTGGCAATTTTTGAGA
EST: gi|298177932|gb|HO023781.1|HO023781
EST:     CGCACAACCATCTTCCAATTTTGTTGGAACATGTCCTTACATGTGCCCAG                         AAAGAGAGAGGATCCAGCGTGAAAAACTGCGAGATTTGGCAATTTTTGAGA
genomic: CGCACAACCATCTTCCAATTTTGTTGGAACATGTCCTTACATGTGCCCAGgtaaacactt ... ttatccacagAAAGAGAGAGGATCCAGCGTGAAAAACTGCGAGATTTGGCAATTTTTGAGA
EST: gi|193535726|gb|FK493530.1|FK493530
EST:     TGCACAGCCATCTTCCAATTTTGTTGGAACATGTCCTTACATGTGCCCAG                         AAAGAGAGAGGATCCAGCGTGAAAAACTGCGAGATTTGGCAATTTTTGAGA
genomic: CGCACAACCATCTTCCAATTTTGTTGGAACATGTCCTTACATGTGCCCAGgtaaacactt ... ttatccacagAAAGAGAGAGGATCCAGCGTGAAAAACTGCGAGATTTGGCAATTTTTGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTGCCAACAGAGCTTCTGCCTCTGTTATCAGTAACACGCTAGAAGACGACGCACAACCATCTTCCAATTTTGTTGGAACATGTCCTTACATGTGCCCAGgtaaacacttttttgttttttttggtcttaacctaaggataaagagatcttattaatcccgagttcggctccggccgaaaggtaattaaagtctggcccg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaaga