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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCGACGCCGCTGCACTATCCTCCGTTCTCGTCGAAGCCACTTCTCACCCTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAGgttcctcttttctcaccctcgacgtttcatttatttccctcctaattttttctgatttctctttcagtttgtcgctgttatttttatttaattttttgta...

Basic information

species Glycine max
transcript GLYMA13G25690.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G25690.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G02090.1 (Arabidopsis thaliana), 5'ss of exon 1
CTCCGACGCCGCTGCACTATCCTCCGTTCTCGTCGAAGCCACTTCTCACCCTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAGgttcctcttttct-caccctcgacgtttcatttatttccctcctaattttttctgatttctctttcagtttgtcgctgttatttttatttaattttttgta---------
 | | |  |||  || ||   | |  |  || |||||||||| || || ||||| |||||||| |||||||||||| | ||||| |||||| ||   ||||| |  ||  | |   |  |  ||| |  |    ||| | | ||  | || |  | |     |  ||  |||     | || |  ||  | |||  | |||         
TTGCAAATCCGAGGCTCTGGGCCCGCTCATCATCGAAGCCACATCGCATCCTTCTCTCTTCGCCTTCTCCGAGATTTTGGCTCTACCCAATGTTGCCCAGgtactactactttatgcttttcacgatctagggttttacatgcttttgttcttcgctgatcataacaacttg--atagatactagtagctgattaatcgtaattgtgcag

upper sequence: GLYMA13G25690.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv15s0021g01580.t01 (Vitis vinifera), 5'ss of exon 1
CTCCGACGCCGCTGCACTATCCTCCGTTCTCGTCGAAGCCACTTCTCACCCTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAGgttcctct--tttctcaccctcgacgtttcatttatttccctcctaattttttctg-atttctctttcagtttgtcgctgttatttttatttaattttttgta
|  | | | | | || ||  || ||||  || |||| |||||||| ||||| ||||||||||| || || |||||||||||| | |||||| || || ||||   | |  ||| |     | ||   |   || |      |||   |||   ||   |||   |  ||          |  |   | |   | ||| |    
CCACAATGGCTCCGCCCTCGCCACCGTGATCCTCGACGCCACTTCGCACCCCTCGCTCTTCGCCTTTTCGGAGATTCTCGCTGTTCCCAATGTTGTTGAGgtctgtatcgttttttgttttggattctgatttgaagcttatccgcgtttgccctatgtttagttcccaaggaaaattgggaaaggtcacgcattttctc---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524489|gb|BU083300.1|BU083300
EST:     CTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAG                         CTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCA
genomic: CTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAGgttcctcttt ... cttattgcagCTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCA
EST: gi|22524611|gb|BU083422.1|BU083422
EST:     CTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAG                         CTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCA
genomic: CTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAGgttcctcttt ... cttattgcagCTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCA
EST: gi|31561921|gb|CD487759.1|CD487759
EST:     CTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAG                         CTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCA
genomic: CTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAGgttcctcttt ... cttattgcagCTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCA
EST: gi|18848688|gb|BM567807.1|BM567807
EST:     CTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAG                         CTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCA
genomic: CTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAGgttcctcttt ... cttattgcagCTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCA
EST: gi|23053053|gb|BU577544.1|BU577544
EST:     CTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAG                         CTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCA
genomic: CTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAGgttcctcttt ... cttattgcagCTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCA
EST: gi|19053359|gb|BM732026.1|BM732026
EST:     CTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAG                         CTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCA
genomic: CTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAGgttcctcttt ... cttattgcagCTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCA
EST: gi|16346940|gb|BI972535.1|BI972535
EST:     CTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAG                         CTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCA
genomic: CTTCGCTCTTCGCTTTCTCCGAGATTCTCGCTCTGCCCAATCTTCTTCAGgttcctcttt ... cttattgcagCTTGAAGCAACTGAGAATTCTGCTTATCTTGATATGCTTCGGTTGTTTGCA