1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCCAGAGCTCTGCTCGCCGGCGCTGAAGAAGGAGGCCGTCCTCCTCCGGCCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccgtttcatccgttctgactcagcgaactcggccacgtcactctcctaactaatgtcattcaattttttcattttttaattattattatcacag
species | Glycine max |
transcript | GLYMA13G24360.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|7326908|gb|AW620706.1|AW620706
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|15287940|gb|BI471831.1|BI471831
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|209724251|gb|BW662892.1|BW662892
genomic: CTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|15664239|gb|BI701610.1|BI701610
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|26056377|gb|CA799291.1|CA799291
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|213594399|gb|DB973640.1|DB973640
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|20076102|gb|BQ094885.1|BQ094885
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|31561929|gb|CD487767.1|CD487767
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|120530166|gb|EH258300.1|EH258300
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|209725000|gb|BW659746.1|BW659746
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|20449743|gb|BQ253867.1|BQ253867
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|209710025|gb|BW653532.1|BW653532
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|15338168|gb|BI498832.1|BI498832
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|5760087|gb|AI965450.1|AI965450
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|8404364|gb|BE059998.1|BE059998
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|209707100|gb|BW683287.1|BW683287
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|209721962|gb|BW669348.1|BW669348
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|31560884|gb|CD486722.1|CD486722
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|17023242|gb|BM094276.1|BM094276
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|209706117|gb|BW680861.1|BW680861
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|20449432|gb|BQ253556.1|BQ253556
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGTEST: gi|213615016|gb|DB957054.1|DB957054
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGGT
EST: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGG AGAAGCAAAGGTTGGCTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGG
genomic: CCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccg ... attatcacagAGAAGCAAAGGTTG-CTCCGGCGGGGTTTTTCGAGAAGTATCCGGCTCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCAGAGCTCTGCTCGCCGGCGCTGAAGAAGGAGGCCGTCCTCCTCCGGCCATGCCTCGCCGCCGCCTCCTCGCCGGCCGAGGGCAGTGATTCCGCCGGgtgaggtccgtttcatccgttctgactcagcgaactcggccacgtcactctcctaactaatgtcattcaattttttcattttttaattattattatcacag
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