Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTTTTAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtattaatggcactttcttcttgttcttcttccatcaactccttttgtaggatttgtgattcattaactcatctgaactcaataatcgatttgcct...

Basic information

species Glycine max
transcript GLYMA13G21520.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23057424|gb|BU578098.1|BU578098
EST:     TGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: TGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|209720831|gb|BW659525.1|BW659525
EST:     AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|151411427|gb|EV281238.1|EV281238
EST:     AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|13790867|gb|BG653458.1|BG653458
EST:     GGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: GGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|33388019|gb|CA851226.1|CA851226
EST:     GGGTTTACACTGAGGAGGCACACCTTCAGGNAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: GGGTTTACACTGAGGAGGCACACCTTCAGG-AGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|120529878|gb|EH258012.1|EH258012
EST:     CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|192329410|gb|FK023628.1|FK023628
EST:     TAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: TAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|13787312|gb|BG649904.1|BG649904
EST:     CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|120531053|gb|EH259186.1|EH259186
EST:     CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|9203781|gb|BE330005.1|BE330005
EST:     ACTGAGGATGCACACCTTCAGGAGCAGTCATGGTTCTCAG                         AACCGAGCTGTGCCGATTCATCGGTGCCAAAATCTACCCACGGAAAGGCAT
genomic: ACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|213618473|gb|DB967710.1|DB967710
EST:     AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|298185626|gb|HO030839.1|HO030839
EST:     TAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: TAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|254341112|gb|GR854840.1|GR854840
EST:     CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|17021663|gb|BM092697.1|BM092697
EST:     AGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|57575853|gb|CX548824.1|CX548824
EST:     GGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: GGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|7926002|gb|AW832028.1|AW832028
EST:     GAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: GAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|6725370|gb|AW309769.1|AW309769
EST:     ATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGAAAAGGCAT
genomic: ATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|209722711|gb|BW657965.1|BW657965
EST:     AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|213619695|gb|DB967317.1|DB967317
EST:     TAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: TAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|207680957|gb|GD664084.1|GD664084
EST:     AGGGTTTACTACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGGTTTAC-ACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|151398218|gb|EV268096.1|EV268096
EST:     AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|6566752|gb|AW234384.1|AW234384
EST:     GAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: GAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|7145806|gb|AW507728.1|AW507728
EST:     CCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAAAGGTGCCCAGATATACCCACGGAAAGGCAT
genomic: CCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|192306402|gb|FG997156.1|FG997156
EST:     AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|192325754|gb|FK017976.1|FK017976
EST:     AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|31456728|gb|CD398756.1|CD398756
EST:     GAGG-GGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: GAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|31476383|gb|CD418411.1|CD418411
EST:     GGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: GGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|163926101|gb|EH038392.1|EH038392
EST:     AGGG-TTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGCGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCA
genomic: AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATG-GTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCA
EST: gi|57574256|gb|CX547231.1|CX547231
EST:     CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|57574098|gb|CX547073.1|CX547073
EST:     CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|213599777|gb|DB968427.1|DB968427
EST:     TAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: TAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|192324210|gb|FK017941.1|FK017941
EST:     AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|33388095|gb|CA851302.1|CA851302
EST:     CACTGAGGAGGCACACCTTCAGGNAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CACTGAGGAGGCACACCTTCAGG-AGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|209715513|gb|BW682179.1|BW682179
EST:     AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|17518736|gb|BM187778.1|BM187778
EST:     CACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|4396821|gb|AI495818.1|AI495818
EST:     GGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: GGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|5606228|gb|AI900326.1|AI900326
EST:     CCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|151397032|gb|EV266905.1|EV266905
EST:     AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|12496182|gb|BG046936.1|BG046936
EST:     CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|209702723|gb|BW652766.1|BW652766
EST:     CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCAAAGATCTACCCAGGGAAAGGCAT
genomic: CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|58022509|gb|CX709250.1|CX709250
EST:     CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|7041987|gb|AW471881.1|AW471881
EST:     AGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|58025291|gb|CX712032.1|CX712032
EST:     GGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: GGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|10848042|gb|BF070603.1|BF070603
EST:     CTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|192307537|gb|FK000823.1|FK000823
EST:     AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|12688076|gb|BG154412.1|BG154412
EST:     TGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: TGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|4313982|gb|AI461101.1|AI461101
EST:     GCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: GCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|298164889|gb|HO010886.1|HO010886
EST:     TAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: TAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|19054246|gb|BM732913.1|BM732913
EST:     CACTGAGGAGGCACACCTTCAGGAGCAGACATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|192298391|gb|FG989142.1|FG989142
EST:     AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|209723192|gb|BW675138.1|BW675138
EST:     AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|6482694|gb|AW201931.1|AW201931
EST:     CAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|16347827|gb|BI973422.1|BI973422
EST:     AGGAGGCACACCTTCAGGAGCAGTCATGGAATCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCA
genomic: AGGAGGCACACCTTCAGGAGCAGTCATGG-TTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCA
EST: gi|15664207|gb|BI701578.1|BI701578
EST:     CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|213607190|gb|DB965104.1|DB965104
EST:     TAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: TAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|58022219|gb|CX708960.1|CX708960
EST:     CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|209720832|gb|BW659526.1|BW659526
EST:     AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: AGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|298165579|gb|HO011628.1|HO011628
EST:     TAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: TAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|20814420|gb|BQ298898.1|BQ298898
EST:     GGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: GGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|209705937|gb|BW661754.1|BW661754
EST:     GGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: GGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
EST: gi|10846233|gb|BF069176.1|BF069176
EST:     CACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAA                         AACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT
genomic: CACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtatta ... gctgtatcagAACCGAGCTGTGCCGATTCAGCGGTGCCAAGATCTACCCAGGGAAAGGCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGTTTTTAGGGTTTACACTGAGGAGGCACACCTTCAGGAGCAGTCATGGTTCTCAAgtatgtattaatggcactttcttcttgttcttcttccatcaactccttttgtaggatttgtgattcattaactcatctgaactcaataatcgatttgcct

- - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - GAGCAG