1 5' 3' | 2 5' 3' | 3 5' 3' |
AAGAATTGGCTATCGCTGGAACAGCTTTTGTTTGACAGCACAGCACTCGGAAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAGgtgcgcatttctcttgttcactttcagatctattccattcccattccacgccgtttcttgcgtcccttttttcttattatttctcccatttccccctctt...
species | Glycine max |
transcript | GLYMA13G20310.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAG AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGAEST: gi|192325493|gb|FK017219.1|FK017219
genomic: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGA
EST: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAG AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGAEST: gi|298192476|gb|HO036558.1|HO036558
genomic: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGA
EST: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAG AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGAEST: gi|193317419|gb|FK281609.1|FK281609
genomic: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGA
EST: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAG AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGAEST: gi|192300654|gb|FG989641.1|FG989641
genomic: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGA
EST: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAG AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGAEST: gi|207763978|gb|GD738857.1|GD738857
genomic: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGA
EST: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAG AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGAEST: gi|298186614|gb|HO037247.1|HO037247
genomic: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGA
EST: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAG AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGAEST: gi|48575259|gb|CO036314.1|CO036314
genomic: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGA
EST: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAG AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGAEST: gi|120528947|gb|EH257081.1|EH257081
genomic: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGA
EST: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAG AATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGA
genomic: AAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAGgtgcgcattt ... ttcatcacagAATGGCATCCAACAGGGGTCAAGGTGGAATTCAGCAGTTGTTGGCTGCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAATTGGCTATCGCTGGAACAGCTTTTGTTTGACAGCACAGCACTCGGAAATTTCTGGCGATCTCTGCGTTTTCCCCTATTTTTTCTGAATCCCACAGgtgcgcatttctcttgttcactttcagatctattccattcccattccacgccgtttcttgcgtcccttttttcttattatttctcccatttccccctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccccc