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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCAACATCAAGAAGGAGACGCTTAGGATTGAGCCTGATGACGAGAATCCTGGCCGTTTCCTTGTGTCATTTACGTTTGATGCCACCGTTTCGGGGAGgtaacaccgtttttttcttccttttattttatgatggtgtaataaggtaattgtgttttgtgtttattgattagtgtgtggtgtcgtgtgaatgatggta...

Basic information

species Glycine max
transcript GLYMA13G20270.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G20270.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g15000.1 (Oryza sativa), 5'ss of exon 1
ATGTCAACATCAAGAAGGAGACGCTTAGGATTGAGCCTGATGACGAGAATCCTGGCCGTTTCCTTGTGTCATTTACGTTTGATGCCACCGTTTCGGGGAGgtaacaccgtttttttcttccttttattttatgatggtgtaataaggtaattgtgttttgtgtttattgattagtgtgtggtgtcgtgtgaatgatggta---
| |||||| ||||||||||||| ||| |||||||||||||||| |||   || ||||| ||||| ||  | || || ||||| |||||| || | || |||| | | | ||| ||  ||  |   ||   |     |||  |||    | || |||   |     |||  ||  ||| | ||  | |    | |||   |   
ACGTCAACCTCAAGAAGGAGACTCTTCGGATTGAGCCTGATGAGGAGTGCCCGGGCCGCTTCCTCGTCGCCTTCACCTTTGACGCCACCCTTGCTGGAAGgtga-atcttttgttcttttgtacaatcaaacttatgtgctatatttcatttatgtgccgaaagaatt--ttgctgtttagttgcatacttaagatttcactg

upper sequence: GLYMA13G20270.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G860152_T02 (Zea mays), 5'ss of exon 1
ATGTCAACATCAAGAAGGAGACGCTTAGGATTGAGCCTGATGACGAGAATCCTGGCCGTTTCCTTGTGTCATTTACGTTTGATGCCACCGTTTCGGGGAGgtaaca--ccgtttttttcttccttttattttatgatggtgtaataaggtaatt-gtgttttgtgtttattgattagtgtgtggtgtcgtgtgaatgatggta
| |||||| | |||||||||||||||||||| ||||||||||| |||   |||||||  ||||| ||  | || || ||||| ||||| ||  | || |||| |     |  |  ||   |||  |||   |   |   |||  ||   ||||| || |||  |||||     | | | |    |  | ||  |   ||   |
ACGTCAACCTTAAGAAGGAGACGCTTAGGATCGAGCCTGATGAAGAGTGCCCTGGCCACTTCCTCGTTGCCTTCACCTTTGACGCCACGGTCGCTGGCAGgtgattattcactcattcagtccacttaacatcaaaca-tgttgtattctaatttgtatttcatgtttgcatgtgaatctcc--ttccctggtatctattcca