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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGACGTCGAAAAGCACCGCGATGCCAATGTCTCCGGCGACGATGCCTTTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgcccccgcagaattctgcataactcaatttgtgccctaattggtcaacttctcttaaaaatcacggaattagggtattccatgactcttatggtatatggagggaaaatttttgattaattattttgaacttttgtgtag

Basic information

species Glycine max
transcript GLYMA13G20220.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18038998|gb|BM307292.1|BM307292
EST:     TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAG                         AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
EST: gi|10231727|gb|BE800615.1|BE800615
EST:     TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAG                         AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
EST: gi|13480377|gb|BG509720.1|BG509720
EST:     TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAG                         AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
EST: gi|192310402|gb|FK002282.1|FK002282
EST:     TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAG                         AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
EST: gi|208147077|gb|GD950652.1|GD950652
EST:     TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAG                         AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCA
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCA
EST: gi|27424308|gb|CA935828.1|CA935828
EST:     TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAG                         AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
EST: gi|7639740|gb|AW734056.1|AW734056
EST:     TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAG                         AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
EST: gi|13790226|gb|BG652817.1|BG652817
EST:     TTGCCAGACTATACGCCTCCGTCGACGCCGACATCTTGGCCTTGCTTCAG                         AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
EST: gi|213591902|gb|DB973439.1|DB973439
EST:     TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTCGCTTCAG                         AAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC
genomic: TTGCCAGACTATACGCCTCCGTCGACGCCGACATCGTGGCCTTGCTTCAGgtacgccccc ... ttttgtgtagAAAGCAGAAAGTGCTTCTAAGGAGAAAGGTAAGGCATCTGCTGTTGCGATC