1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGTgtaagctgacttgaatttttctttcctgacattatactttctaattccttttctggccaataacatgtatgatgttataacttacaagcagtctgttgcc...
species | Glycine max |
transcript | GLYMA13G19870.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGT TCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAGTCTGTAAAAEST: gi|193575831|gb|FK528070.1|FK528070
genomic: AGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGTgtaagctgac ... ttccccacagTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAGTCTGTAAAA
EST: AGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGT TCTAGTGGGAGTGGCAGNGAAAGTGGCACACAAACCCAGAAGTCTATAAAA
genomic: AGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGTgtaagctgac ... ttccccacagTCTAGTGGGAGTGGCAGTGAAAGTGGCACACAAACCCAGAAGTCTGTAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGAAGATGTCACAGTgtaagctgacttgaatttttctttcctgacattatactttctaattccttttctggccaataacatgtatgatgttataacttacaagcagtctgttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG