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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGTATGATGACTCTACCCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGgttagttattatctgtttataatggaattccttgtttgtctggttagatttggacaccgaccttttaataactactgtttgcattgtcagattttatgtt...

Basic information

species Glycine max
transcript GLYMA13G19870.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19870.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g17570.1 (Oryza sativa), 5'ss of exon 4
AGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGTATGATGACTCTACCCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGgttagttattatctgtttataatgg-aattccttgtttgtctggttagat-ttggacaccgaccttttaataactactgt--ttgcattgtcagattttatgtt
|||||  | | | | |   | || | ||||||||| |||||| ||||||||||||||||||| || ||||  ||||||||||| || ||| |||||||||||  |  | |  |   ||  |||   ||||  |||||  |  | ||   | ||   |   |    || ||| |||  | |  |  |||  ||  |||  |    
AGGTTCCTCCCTGTGAAGACACTGAGGGTCTTGCTGGTGGAGAATGATGACTCTACCCGTCAGGTGGTCAGCGCACTGCTTCGTAAGTGTTGTTATGAAGgtatgc-actg-caaattgcaataccaatttattgttaataagtttttctattttccgagggaagttaaattacttttatgatcacatattcgtattggaga--

upper sequence: GLYMA13G19870.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G095727_T03 (Zea mays), 5'ss of exon 5
AGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGTATGATGACTCTACCCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGgttagttat-tatctgtttataatggaattccttgtttgtctggttagatttggacaccgaccttttaataactactgttt--gcattgtcagattttatgtt
|||||  | | | | |   | || |  |||||||| |||||| ||||||||||||| ||||| || |||| ||| ||||| || || ||  | |||||||||  |   |  |  || | |   |    |   ||| || |    |   ||    |||       |  ||| | ||     |  | |    |  |||| ||   
AGGTTCCTACCTGTGAAGACACTGAGAGTCTTGCTGGTGGAGAATGATGACTCTACTCGTCAGGTGGTCAGTGCCCTGCTCCGTAAGTGCTGCTATGAAGgtacgcgctgcaaatggtaaagctaatttgatttgatttttctctcgcatc-aaacaggagagctgcaatcattatatactaagaagaaactaatttgatt--

upper sequence: GLYMA13G19870.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G02810.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGTTTTTGCATATTAGATCCCTTAAGGTCTTGCTTGTGGAGTATGATGACTCTACCCGTCATGTTGTCACTGCACTGCTTCGCAATTGTAGTTATGAAGgttagttatta----tctgtttataatggaattccttgtttgtctggttag--atttggacaccgaccttttaataactactgtttgcattgtcagattttatgtt
|||||| | ||| | ||| || |||  ||  ||||||| ||  |||| ||||  || ||| || | || |||||||| |||||||||||||| ||||||||| |||| | |    | ||     | |  |||   | |    | |   ||    ||| |   | |    || | | | || | ||  |  |||||           
AGGTTTCTTCATGTGAGAACCATTAGAGTTCTGCTTGTCGAAAATGACGACTGCACTCGTTATATCGTTACTGCACTTCTTCGCAATTGTAGCTATGAAGgtcagttttgaagcctatggcccaactttaatctatagcgcatatatgtacccgtttcggttctgtttgttgattgattattattaactctgtcatggcag-----