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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACGTCGTTGAGCCGATTCTGCTGGAGGTGGATCAGATCTATCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCatatccttgtctcgatgttctaactctaactcagcgttttttttaagttctaataactcttttttcgtaatttttattttgcgttgagttctgtgatccttaattattagtttac

Basic information

species Glycine max
transcript GLYMA13G19640.1
intron # 1
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g62020.1 (Oryza sativa), 5'ss of exon 1
CGACGTCGTTGAGCCGATTCTGCTGGAGGTGGATCAGATCTATCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCatatccttgtctcgatgttctaactctaactcagcgttttttttaagttctaataactcttttttcgtaatttttattttgcgttgagttctgtgatccttaattattagtttac
||| ||||| ||||| || ||||| |||||||| | |||||||||||||||||| |||||||| || ||||||||||| ||||||||| ||||||| ||||||||||| ||     || |    |||       | |   ||| |  | || | |    | |   | | ||||    ||  | || | || | |  |  |   ||  | |     
CGATGTCGTCGAGCCCATCCTGCTCGAGGTGGACCGGATCTATCACCTCGCGTGCCCCGCGTCCCCTGTGCACTACAAGTACAACCCCATCAAGACGATCatatccttctc-----gtcccggatctgc----acatacctttgatttgcttacattcatgtcgacttgatttgatcttctcctttatttttttt-tattgggttggtgg-----

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os03g17230.1 (Oryza sativa), 5'ss of exon 1
CGACGTCGTTGAGCCGATTCTGCTGGAGGTGGATCAGATCTATCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCatatccttgtctcgatgttctaactctaactcagcgttttttttaagttctaataactcttttttcgta--atttttattttgcgttgagttctgtgatccttaattattagtttac
||||||||| ||||| || || || ||||| || |||||||| |||||||| || || || || || || |||||||||| ||||||| |||||||||||||||||||  | |    | | ||||||    ||   |||  |  ||     ||   |  || | |  |   ||| ||   |||| | ||||    ||    | |             
CGACGTCGTCGAGCCCATCCTCCTCGAGGTCGACCAGATCTACCACCTCGCCTGCCCGGCATCCCCCGTCCACTACAAATTCAACCCCATCAAGACCATCatatcctttccac----tgcaaactctgctccacattttcgtacaaaaaacaaaggcctttgtctgcttgcattattgaattgc-tggagtgaaatggatatgag------------

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G359234_T03 (Zea mays), 5'ss of exon 1
CGACGTCGTTGAGCCGATTCTGCTGGAGGTGGATCAGATCTATCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCatatccttgtctcgatgttctaactctaactcagcgttttttttaagttctaataactcttttttcgtaatttttattttgcgttgagttctgtgatccttaattattagtttac
||| || || ||||| || || || |||||||| | |||||| ||||||||||| ||||||||||| ||||||||||| ||||||||  ||||||| |||||||||||  | |||    ||   |||  |     | ||||  | |  |  ||     ||  ||  |      |  | ||    |   || ||| ||   |  |           
CGATGTAGTCGAGCCAATCCTCCTCGAGGTGGACCGGATCTACCACCTCGCGTGCCCCGCGTCGCCTGTGCACTACAAGTACAACCCAATCAAGACGATCatatcctt--cacga----ctggatctcgccggttgattttgcttacattgaaagcgactcgttctgatcccatcgtcttcttctcttttttgt-atttctggtggc--------

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 1
CGACGTCGTTGAGCCGATTCTGCTGGAGGTGGATCAGATCTATCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCatatccttgtctcgatgttctaactctaactcagcgttttttttaagttctaataactcttttttcgtaatttttattttgcgttgagtt--ctgtgatccttaattattagtttac
||||||||| || || ||||| || ||||| || |||||||| |||||||| || ||||| || || ||||||||||| | ||||||| |||| |||||||||||||   |     | ||     |   | ||   ||  |    |     |   |   |   ||||| || ||| | ||   |||  ||   | ||  |    ||           
CGACGTCGTCGAACCCATTCTCCTAGAGGTCGACCAGATCTACCACCTCGCCTGCCCCGCATCCCCCGTGCACTACAAGTTCAACCCCATCAAAACCATCatatcctcccc-----gctccgctgcccgcgcataattcgtccacatcctcacagaaattggattcgttatatttgtctt-tattggtttatttatggacacggat-----------

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G370048_T01 (Zea mays), 5'ss of exon 2
CGACGTCGTTGAGCCGATTCTGCTGGAGGTGGATCAGATCTATCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCatatcctt---gtctcgatgttctaactctaactcagcgttttttttaagttctaataactcttttttcgtaatttttattttgcgttgagttctgtgatccttaattattagtttac
||| || || || || || || || ||||| || | |||||| |||||||| || ||||||||||| || || ||||| || |||||  ||||||| |||||||||||   | || ||| |  |   |  |  |    | ||   || |   | | |   ||   | |  | |||||| ||||| || | ||   | | |  ||              
CGATGTAGTCGAACCAATCCTCCTCGAGGTCGACCGGATCTACCACCTCGCATGCCCCGCGTCGCCCGTTCATTACAAGTATAACCCAATCAAGACGATCatatccttcacgactggatctcatcggttgatttt---gcttacattgaaagcgacttgttcacctgttttcattttttttttgggt-gggtggcgggctggtt--------------

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S209_52V6.1 (Physcomitrella patens), 5'ss of exon 1
CGACGTCGTTGAGCCGATTCTGCTGGAGGTGGATCAGATCTATCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCatatccttgtct---cgatgttcta---actctaactcagcgttttttttaagttctaataactcttttttcgtaatttttattttgcgttga----gttctgtgatccttaattattagtttac----------------
||| || || |||||  |  ||||||||||||| ||||| |||||||| |||||||| |||||||| ||||| ||||| | ||||||| ||||||| ||||||||||| | |   |||  |  |      | | | || |   |    ||  ||| |    |    | | ||    ||| | |  ||    ||    ||| |    || | | |  |  |    |                
CGATGTGGTGGAGCCTTTGTTGCTGGAGGTGGACCAGATTTATCACCTTGCGTGTCCGGCGTCGCCCGTGCATTACAAGTTCAACCCCATCAAGACAATCatatccttttttgtgcgagatcttgtgtgttatgaatctgaaatccccttgcgtttttcctatgaatgtctcacgttttgtttgctgtagagaagatgttttcgattcgtcattcgtgcggcccccttaatcttcctacac

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S60_124V6.1 (Physcomitrella patens), 5'ss of exon 1
CGACGTCGTTGAGCCGATTCTGCTGGAGGTGGATCAGATCTATCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCatatccttgtctcgatgttctaactctaactcagcgttttttttaagttctaataactcttttttcgtaatttttattttgc-gttgagtt-ctgtgatccttaattattagtttac
||||||||| |||||  |  |||||||||| ||||||||||| ||||| || || || || || || || |||||||| | |||||| |||||||| |||||||||||   || |   |||  ||| |  | |   |    |||  |  | ||   ||  |    | | ||       | || |||| ||| ||||  | | |              
CGACGTCGTGGAGCCTCTCTTGCTGGAGGTCGATCAGATCTACCACCTTGCTTGCCCTGCCTCACCTGTCCACTACAAGTTCAACCCTGTCAAGACAATCatatcctt--ttccaccctctc-ctccagttgatgatcacgttttcgcacaaaatgcttgtcagactttatcagagcgtagctgttgtgtttctgttgtgcct--------------

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S120_28V6.1 (Physcomitrella patens), 5'ss of exon 1
CGACGTCGTTGAGCCGATTCTGCTGGAGGTGGATCAGATCTATCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCatatccttgtctcgatgttctaactctaactcagcgttttttttaagttctaataactcttttttcgtaatttttattttgcgttgagttctgtgatccttaattattagtttac
 || || || || ||  || ||||||||||||| ||||| || || || || ||||| |||||||| ||||| ||||||| ||| ||  ||||||| |||||||||||     ||   |     | || |          |    ||  |   |   ||   |   ||  ||  | | | ||  ||     || |  |  |              
TGATGTGGTCGAACCCCTTTTGCTGGAGGTGGACCAGATTTACCATCTGGCATGTCCGGCGTCGCCCGTGCATTACAAATTCAATCCAATCAAGACAATCatatcctttcaaagaatgttggggtttaccgttaatgacatcaggagggcgggttcgtcagatcatgttgttggt-tgtggcactggtgcttgcgtgctct--------------

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 1
lower sequence: PP1S120_29V6.1 (Physcomitrella patens), 5'ss of exon 1
CGACGTCGTTGAGCCGATTCTGCTGGAGGTGGATCAGATCTATCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCatatccttgtct---cgatgttctaactctaactcagcgttttttttaagttctaataactctttttt-cgtaatttttattttgcgttgagt---tctgtgatccttaa---ttattagtttac---------
             ||  |  ||||||||||||| ||||| || || || || ||||| |||||||| ||||| ||||||| ||| ||  ||||||| ||||||||||| | |   ||   |  | | | ||           || || ||||    ||    | |||| | || |  || |        || |   || ||| || |  |   |  ||    | |         
------------ACCCCTGTTGCTGGAGGTGGACCAGATTTACCATCTGGCATGTCCGGCGTCGCCCGTGCATTACAAATTCAATCCAATCAAGACTATCATATCCTTTTTTgttcgggatcttgaatttattctgaa----ttattgagtttatgtagtgttattttgcatagtccttctagcagagagaatgtatccgtggtcgtgcagcctccttgacctgcctccacaag

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ23020 (Selaginella moellendorffii), 5'ss of exon 1
------------CGACGTCGTTGAGCCGATTCTGCTGGAGGTGGATCAGATCTATCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCatatccttgtctcgatgttctaactctaactcagcgttttttttaagttctaataactcttttttcgtaatttttattttgcgttgagttctgtgatccttaattattagtttac
            ||| || || |||||| | ||||||||||||||||||||||||||| | || || || |||||||| || |||||||||| |||||| |||||||| ||||||||||| |||     |  |  ||     ||  ||||| |||  ||      |||| | |||||     ||||  ||      | |  |||  || | || |  |         
GCTCATCCGGCACGATGTTGTGGAGCCGCTGCTGCTGGAGGTGGATCAGATCTATCACTTGGCCTGCCCTGCGTCGCCCGTCCACTACAAATTCAACCCGgtcaagacgatcatatccttttct-----tctttgctt--gttcttcgtttctttcgagcatc--taacgcgtttttt----ttttcgttgcttccttaactcttggagctttcacaag--------

upper sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ30517 (Selaginella moellendorffii), 5'ss of exon 2
------------CGACGTCGTTGAGCCGATTCTGCTGGAGGTGGATCAGATCTATCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCatatccttgtctcgatgttctaactctaactcagcgttttttttaagt-tctaataactcttttttcgtaatttttattttgcgttgagttctgtgatccttaattattagtttac
            ||| || || |||||| | ||||||||||||||||||||||||||| | || || || |||||||| || |||||||||| |||||| |||||||| ||||||||||| |||     |  |  ||     ||  ||||| |||  ||  |||||    | ||||||  |  ||||| ||      | |  |||  || | || |  |         
GCTCATCCGGCACGATGTTGTGGAGCCGCTGCTGCTGGAGGTGGATCAGATCTATCACTTGGCCTGCCCTGCGTCGCCCGTCCACTACAAATTCAACCCGgtcaagacgatcatatccttttct-----tctttgctt--gttcttcgtttgtttcgagcatctaacgcgtgttttttttttttttttgttgcttccttaactcttggagctttcacaag--------