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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAGCATTCCACTCACACCTCATCGTTTCTCTCTCTAGATCTCTGTTTCTTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttcccgtttttcctccttccactcccaccgctagggttgcgatgctcctaaacttttttttttcttaattaattcttatttctgcttaattttct...

Basic information

species Glycine max
transcript GLYMA13G19500.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298184004|gb|HO029217.1|HO029217
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|12489759|gb|BG043280.1|BG043280
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|26269126|gb|CA820189.1|CA820189
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|192330021|gb|FK020837.1|FK020837
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|13479768|gb|BG509111.1|BG509111
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|19346407|gb|BM891287.1|BM891287
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|37996937|gb|CF808526.1|CF808526
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|298181507|gb|HO022946.1|HO022946
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|298169347|gb|HO020707.1|HO020707
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|6133848|gb|AW132241.1|AW132241
EST:     TCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|9565429|gb|BE474938.1|BE474938
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|7587913|gb|AW703719.1|AW703719
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|8403914|gb|BE059548.1|BE059548
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|192324146|gb|FK017877.1|FK017877
EST:     -NNNNNNNCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCGATTGAGACCCCAAACAAGGTTTCCAACTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|213593665|gb|DB971687.1|DB971687
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|4396573|gb|AI495570.1|AI495570
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|209719745|gb|BW672120.1|BW672120
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|298178505|gb|HO024240.1|HO024240
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|209701982|gb|BW664582.1|BW664582
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
EST: gi|17154018|gb|BM143951.1|BM143951
EST:     TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCG                         AAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT
genomic: TTCTTTTTCTCCAACCTTCGTTTCACCACCACACTTACATTACTTTGTCGgtgagttccc ... cggagtgcagAAATGGCTCCACCAATTGAGACCCCAAACAAGGTTTCCAGCTATCAACAGT