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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGAGGGGATTGCTCAACAAGCTCGTCTCTCGCTCCCTCTCCGTCGCCGGAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtctcttctcaccgttagcgatattattacgattcacaaatcaattccaattccaagcttcgcggaatctgttcctttcgctatagattcatct...

Basic information

species Glycine max
transcript GLYMA13G18730.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G18730.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g40830.1 (Oryza sativa), 5'ss of exon 1
GGTGAGGGGATTGCTCAACAAGCTCGTCTCTCGCTCCCTCTCCGTCGCCGGAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgt-ctctgtctcttctcaccgttagcgatattattacgattcacaaatcaattccaattccaagcttcgcggaatctgttcc-----tttcgctatagattcatct---------------------------------------
|||  | |||| ||||   ||||| | ||| ||| |||||||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||| ||||  |    | | ||   ||    ||      ||||| |  | ||  | |  |||  |  || ||||  | | ||        |||| | |||   | |                                         
GGTTCGCGGATCGCTCGGGAAGCTGGCCTCGCGCGCCCTCTCCGTCGCCGGGAAATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgctcttgcaaccccctccaccag----atcccgcagattcccgcaccatattccgttc-gatttttgcgggtttttttttggagtcttcgatttaggggcctgggctaacgcgctagggttcgtggatgtgtgggtatcgcag

upper sequence: GLYMA13G18730.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G094614_T01 (Zea mays), 5'ss of exon 1
GGTGAGGGGATTGCTCAACAAGCTCGTCTCTCGCTCCCTCTCCGTCGCCGGAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtctcttc-----tcaccgttagcgatattattacgatt-cacaa-atcaattccaattccaagcttcgcggaatctgttcctttcg---ctatagattcatct---------
|||  | |||| ||||  |||||| |  || ||| |||||||||||||||| | |||||||||| | || ||||||||||||||||||||||||||||||||  ||  | || |     |  |  || ||  |   ||||  ||| |     ||  ||||    |         ||     ||| |   || |    | | ||||  |           
GGTTCGCGGATCGCTCGGCAAGCTTGCATCGCGCGCCCTCTCCGTCGCCGGGAGATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgcctagcgctcccagattggcactttgccctcccattagtattgcgtgggatttattcgtgctattttggaggctaggactgatggattagggtttgtggattgtttgggtctgcag

upper sequence: GLYMA13G18730.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G041429_T01 (Zea mays), 5'ss of exon 1
GGTGAGGGGATTGCTCAACAAGCTCGTCTCTCGCTCCCTCTCCGTCGCCGGAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtctcttc-----tcaccgttagcgatattattacgattcacaaatcaattccaattccaagcttcgcggaatctgttcctt-tcgctatagattcatct-----------------
|||  | |||| ||||  |||||| |  || ||| |||||||||||||||| | |||||||||| | || ||||||||||||||||||||||||||||||||  |   | || |     |  |  || ||  |   |||   |   |             ||||      |   |||  |||   ||  | | |   | ||  |                   
GGTTCGCGGATCGCTCGGCAAGCTTGCATCGCGCGCCCTCTCCGTCGCCGGGAGATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgcccagcgctcccagattggcactttgccctcccattttcaagtattgcgtgggatttattcgtgctattttggaggctgggactgatggattagggtttgtggattgtttgggtctgtag

upper sequence: GLYMA13G18730.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G064695_T03 (Zea mays), 5'ss of exon 1
GGTGAGGGGATTGCTCAACAAGCTCGTCTCTCGCTCCCTCTCCGTCGCC-GGAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtctcttc-----tcaccgttagcgatattattacgattcacaaatcaattccaattccaagcttcgcggaatctgttcctt-tcgctatagattcatct-----------------
 ||  | |||| ||||  |||||| |  || ||| |||||||||||||| || | |||||||||| | || ||||||||||||||||||||||||||||||||  |   | || |     |  |  || ||  |   |||   |   |             ||||      |   |||  |||   ||  | | |   | ||  ||                  
-GTTCGCGGATCGCTCGGCAAGCTTGCATCGCGCGCCCTCTCCGTCGCCCGGGAGATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgcccagcgctcccagattggcactttgccctcccattttcaagtattgcgtgggatttattcgtgctattttggaggctgggactgatggattagggtttgtcgattgtttgggtctgcag

upper sequence: GLYMA13G18730.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G064695_T04 (Zea mays), 5'ss of exon 2
GGTGAGGGGATTGCTCAACAAGCTCGTCTCTCGCTCCCTCTCCGTCGCCGGAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtctcttc-----tcaccgttagcgatattattacgattcacaaatcaattccaattccaagcttcgcggaatctgttcctt-tcgctatagattcatct-----------------
                                                 || | |||||||||| | || ||||||||||||||||||||||||||||||||  |   | || |     |  |  || ||  |   |||   |   |             ||||      |   |||  |||   ||  | | |   | ||  ||                  
-------------------------------------------------GGGAGATGGCAGCACCAGCAGCTCCGCCGCCTCAACATCCACGAGTACCAGgtgcccagcgctcccagattggcactttgccctcccattttcaagtattgcgtgggatttattcgtgctattttggaggctgggactgatggattagggtttgtcgattgtttgggtctgcag

upper sequence: GLYMA13G18730.1 (Glycine max), 5'ss of exon 1
lower sequence: AT2G20420.1 (Arabidopsis thaliana), 5'ss of exon 1
GGTGAGGGGATTGCTCAACAAGCTCGTCTCTCGCTCCCTCTCCGTCGCCGGAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtctcttctcaccgttagc-gata-ttattacgattcacaa--atcaattccaattccaagcttcg-cggaatctgttcctttcgctatag-attcatct------------------------------------------------------------------------------
| ||||||||||| | ||||||||||| ||  | || |||||| || |||| ||||||||| || | || || || || ||||||||||||||||| ||||| |||   |||  |||     |   |||| ||     ||||| |     |||| ||  | | | ||      | |  ||| |  || | | |   |  || |||                                                                               
GATGAGGGGATTGGTGAACAAGCTCGTGTCCAGATCTCTCTCCATCTCCGGGAAATGGCAGAACCAACAGCTTCGTCGTCTCAACATCCACGAGTATCAGgt-tcttcttctcttcatttccatttgatagttgcctagattcgcttttgtcaagtcagaattcgagtacgatctgtgtctttgtctgttgtttctgtgttgatccactgattgatttgtggttgatagaattctctgggtttaggataatgtaaagtttgtattgtgattctgatacaaccag

upper sequence: GLYMA13G18730.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv07s0005g03790.t01 (Vitis vinifera), 5'ss of exon 1
GGTGAGGGGATTGCTCAACAAGCTCGTCTCTCGCTCCCTCTCCGTCGCCGGAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtctcttctcaccgttagcgatattattacgattcacaaatcaattccaattccaagcttcgcggaatctgttcctttcgctatagattcatct-----
|||||| |||||| |||||||||| || |||||||| |||  |||||||||||||||||||||  | || |||||||| |||||||| |||||||| |||||| || |    ||   |  ||  |    || || |  ||  ||  ||  ||    |  |     |  |    | |||| | |||  |   |   |||       
GGTGAGAGGATTGGTCAACAAGCTTGTATCTCGCTCTCTCAACGTCGCCGGAAAATGGCAGCAACAGCAGCTCCGCCGTCTCAACATTCACGAGTATCAGgtcccttttctctccttctttttccatctttgttccatttttca--tc--ttgtggtctctgatgttcccttttttgtttcgttca-tgaggtaacataagaaat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213604491|gb|DB970639.1|DB970639
EST:     GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCTGAATTGATGAGCAAACACGGAGTTAATGTTCCGAGAGGCGTGGCT
genomic: GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtct ... atgaaactagGGCGCTGAATTGATGAGCAAACACGGAGTTAATGTTCCGAGAGGCGTGGCT
EST: gi|207821460|gb|GD790609.1|GD790609
EST:     GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCTGAATTGATGAGCAAACACGGAGTTAATGTTCCGAGAGGCGTGGCT
genomic: GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtct ... atgaaactagGGCGCTGAATTGATGAGCAAACACGGAGTTAATGTTCCGAGAGGCGTGGCT
EST: gi|193680795|gb|FK621215.1|FK621215
EST:     GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCTGAATTGA
genomic: GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtct ... atgaaactagGGCGCTGAATTGA
EST: gi|208031111|gb|GD827539.1|GD827539
EST:     GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCTGAATTGATGAGCAAACACGGAGTTAATGTTCCGAGAGGCGTGGCT
genomic: GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtct ... atgaaactagGGCGCTGAATTGATGAGCAAACACGGAGTTAATGTTCCGAGAGGCGTGGCT
EST: gi|213618122|gb|DB965279.1|DB965279
EST:     GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCTGAATTGATGAGCAAACACGGAGTTAATGTTCCGAGAGGCGTGGCT
genomic: GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtct ... atgaaactagGGCGCTGAATTGATGAGCAAACACGGAGTTAATGTTCCGAGAGGCGTGGCT
EST: gi|209716489|gb|BW676939.1|BW676939
EST:     GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCTGAATTGATGAGCAAACACGGAGTTAATGTTCCGAGAGGCGTGGCT
genomic: GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtct ... atgaaactagGGCGCTGAATTGATGAGCAAACACGGAGTTAATGTTCCGAGAGGCGTGGCT
EST: gi|298184933|gb|HO030146.1|HO030146
EST:     GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCTGAATTGATGAGCAAACACGGAGTTAATGTTCCGAGAGGCGTGGCT
genomic: GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtct ... atgaaactagGGCGCTGAATTGATGAGCAAACACGGAGTTAATGTTCCGAGAGGCGTGGCT
EST: gi|298188285|gb|HO034978.1|HO034978
EST:     GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAG                         GGCGCTGAATTGATGAGCAAACACGGAGTTAATGTTCCGAGAGGCGTGGCT
genomic: GAAAATGGCAGCACAACCAACTCCGCCGCCTCAACATCCACGAGTACCAGgtctctgtct ... atgaaactagGGCGCTGAATTGATGAGCAAACACGGAGTTAATGTTCCGAGAGGCGTGGCT