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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAACCCTAGAATTGAAGATGCAACCACAGAGGTTAAGGCAGCATGCCATGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGgttcctcttttccattccttcctattattttctcatttatagctttttttttcaaggtactcattattgttattttcagcttaattattcccattatatt...

Basic information

species Glycine max
transcript GLYMA13G17200.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207800141|gb|GD770680.1|GD770680
EST:     TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAG                         ATAGAGCCTATCTTGAGTGGAAA
genomic: TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGgttcctcttt ... tattttgcagATAGAGCCTATCTTGAGTGGAAA
EST: gi|193726517|gb|FK656177.1|FK656177
EST:     TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAG                         ATAGAGCCTATCTTGAGTAGGAAAATCTGCCACCT
genomic: TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGgttcctcttt ... tattttgcagATAGAGCCTATCTTGAGT-GGAAA-TCTGCCACCT
EST: gi|208178646|gb|GD977087.1|GD977087
EST:     TCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAG                         ATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
genomic: TCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGgttcctcttt ... tattttgcagATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
EST: gi|193620760|gb|FK568484.1|FK568484
EST:     TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAG                         ATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
genomic: TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGgttcctcttt ... tattttgcagATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
EST: gi|208232849|gb|GE030376.1|GE030376
EST:     TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAG                         ATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
genomic: TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGgttcctcttt ... tattttgcagATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
EST: gi|208035174|gb|GD835518.1|GD835518
EST:     TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAG                         ATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
genomic: TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGgttcctcttt ... tattttgcagATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
EST: gi|193629904|gb|FK576024.1|FK576024
EST:     TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAG                         ATAGAGCCTATCTTGAAGTAGGAAAATCTGCCACCT
genomic: TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGgttcctcttt ... tattttgcagATAGAGCCTATCTTGA-GT-GGAAA-TCTGCCACCT
EST: gi|193317265|gb|FK279971.1|FK279971
EST:     TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAG                         ATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
genomic: TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGgttcctcttt ... tattttgcagATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
EST: gi|13252197|gb|BG363100.1|BG363100
EST:     TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAG                         ATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
genomic: TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGgttcctcttt ... tattttgcagATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
EST: gi|193328920|gb|FK295164.1|FK295164
EST:     ATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAG                         ATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
genomic: ATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGgttcctcttt ... tattttgcagATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
EST: gi|208052196|gb|GD853481.1|GD853481
EST:     CCTTACTCCTCCTCAG                         ATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
genomic: CCTTACTCCTCCTCAGgttcctcttt ... tattttgcagATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
EST: gi|13789938|gb|BG652529.1|BG652529
EST:     TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAG                         ATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
genomic: TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGgttcctcttt ... tattttgcagATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
EST: gi|19348273|gb|BM892805.1|BM892805
EST:     TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAG                         ATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
genomic: TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGgttcctcttt ... tattttgcagATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
EST: gi|207709716|gb|GD692304.1|GD692304
EST:     TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAG                         ATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA
genomic: TGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGgttcctcttt ... tattttgcagATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTAACCCTAGAATTGAAGATGCAACCACAGAGGTTAAGGCAGCATGCCATGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGgttcctcttttccattccttcctattattttctcatttatagctttttttttcaaggtactcattattgttattttcagcttaattattcccattatatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC