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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATGGACGGTGGAGTGAACTACAACCCTCGCACTGTGGAAGAGGTTTTCCGGGACTTCAAGGGTCGTAGAGCCGGCATGATCAAGGCTCTCACCACTGgtctctatctcactcttctctttttcttcttacaaacactcctactgagtgtgtctcactcgcttttgttcttgccaattaattttagcgcctcctctgcaaaaattacctgttcctgtttttaatacattctaatatccaactttccttttcctttcttcgcag

Basic information

species Glycine max
transcript GLYMA13G16740.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G16740.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv11s0016g01500.t01 (Vitis vinifera), 5'ss of exon 1
GTGATGGACGGTGGAGTGAACTACAACCCTCGCACTGTGGAAGAGGTTTTCCGGGACTTCAAGGGTCGTAGAGCCGGCATGATCAAGGCTCTCACCACTGgtctctatctcactcttctctttttcttcttacaaacactcctactgagtgtgtctcactcgcttttgttcttgccaattaattt--tagcgcctcctctgcaaaaattacctgttcctgtttttaatacattctaatatccaactttccttttcctttcttcgcag
| |||||| ||||||  | | ||||| ||||| ||||| |||||||||||| |||| || |||||||| ||||| ||||||||||| || |||||||||||| |  || ||  |  | | | ||| |   |  |      |||  ||  ||   || |     | | |      | ||  || |   ||| |       |   | | ||                                                          
GCGATGGATGGTGGACCGCAGTACAATCCTCGAACTGTAGAAGAGGTTTTCAGGGATTTTAAGGGTCGCAGAGCGGGCATGATCAAAGCCCTCACCACTGgt-tagatttcgtttctgtttgtttttctcttga------ccttttggttg---ctgagaaattgtgggagagacaaaaaaaatggatagtggagttgatttgagacttc---------------------------------------------------------

upper sequence: GLYMA13G16740.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv09s0002g01600.t01 (Vitis vinifera), 5'ss of exon 1
GTGATGGACGGTGGAGTGAACTACAACCCTCGCACTGTGGAAGAGGTTTTCCGGGACTTCAAGGGTCGTAGAGCCGGCATGATCAAGGCTCTCACCACTGgtctctatctcactcttctctttttcttcttacaaacactcctact-gagtgtgtctcactcgcttttgttcttgccaattaattttagcgcctcctctgcaaaaattacctgttcctgtttttaatacattctaatatccaactttccttttcctttcttcgcag
|  |||||||| || |  |||||||| || |||||||| |||||||||||| | || ||||| || || ||||| ||||||||||| || || || || ||| |   | |   | || | ||||  ||         | |   | | || | ||| |   | |   | |||  |    | |  ||||           ||||                                                                
GCCATGGACGGAGGCGCAAACTACAATCCCCGCACTGTTGAAGAGGTTTTCAGAGATTTCAAAGGCCGCAGAGCTGGCATGATCAAAGCCCTAACTACAGgttttcttttgttttttattttttaatttgagtttgaatttgaatttgaatttgttt---ttggaatggtttgttttgagtgtttttgtttttggtcttgcag---------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192298086|gb|FG991366.1|FG991366
EST:     CCGGGACTTCAAGGGTCGTAGAGCCGGCATGATCAAGGCTCTCACCACTG                         ATGTTGAAGAATTTTTCCAGCAGTGCGATCCTG
genomic: CCGGGACTTCAAGGGTCGTAGAGCCGGCATGATCAAGGCTCTCACCACTGgtctctatct ... ttcttcgcagATGTTGAAGAATTTTTCCAGCAGTGCGATCCTG