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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTTCGGCACCAGCGAAACGCTCTTCGTTATCTTTTCTCAGACTCCGCGGCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttctctctctcttgttttctctcacaacacaatactttcatgtttttctttttctgtgcgctgtttattgttcttaaactgcgttttattttg...

Basic information

species Glycine max
transcript GLYMA13G16570.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208120533|gb|GD915638.1|GD915638
EST:     GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG                         TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: gi|209702283|gb|BW677978.1|BW677978
EST:     GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG                         TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: gi|213611789|gb|DB958883.1|DB958883
EST:     GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG                         TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: gi|18848532|gb|BM567716.1|BM567716
EST:     CGTAGATCCGAGGAGTTAAAGGAAATCCTAACTCATCATCTCAACTCAAG                         TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
genomic: CGTAGATCCGAGGAGTT-CGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: gi|192324821|gb|FK018797.1|FK018797
EST:     GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG                         TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: gi|213599313|gb|DB962322.1|DB962322
EST:     GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG                         TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: gi|209702379|gb|BW656354.1|BW656354
EST:     GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG                         TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: gi|10846840|gb|BF071428.1|BF071428
EST:     GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG                         TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: gi|213590331|gb|DB970129.1|DB970129
EST:     GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG                         TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: gi|209710996|gb|BW681346.1|BW681346
EST:     GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG                         TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: gi|213600814|gb|DB968820.1|DB968820
EST:     GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG                         TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: gi|16349138|gb|BI974733.1|BI974733
EST:     GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG                         TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: gi|213607320|gb|DB965150.1|DB965150
EST:     GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG                         TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
EST: gi|7686567|gb|AW757215.1|AW757215
EST:     GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAG                         TCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG
genomic: GCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttc ... cgttttgcagTCATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGTTCGGCACCAGCGAAACGCTCTTCGTTATCTTTTCTCAGACTCCGCGGCGTAGATCCGAGGAGTTCGGGAAATCCTAACTCATCATCTCAACTCAAGgtccttcttctctctctcttgttttctctcacaacacaatactttcatgtttttctttttctgtgcgctgtttattgttcttaaactgcgttttattttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcac