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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATGGACTCTCACAGCACCGAGTTGCTCACTTGGGCTCTGTTCAAAGTGGCTCAGCCCGGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGgtataaacaaaaccatcatatgtgtttctttggatgaaacttacacacattttttaagtgtttttggtgttgttcttctaccagaattggagtttcatct...

Basic information

species Glycine max
transcript GLYMA13G09620.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G09620.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g01680.t01 (Vitis vinifera), 5'ss of exon 1
AAGATGGACTCTCACAGCACCGAGTTGCTCACTTGGGCTCTGTTCAAAGTGGCTCAGCCCGGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGgtataaac------aaaaccatcatatgtgtttctttggatgaaacttacaca-cattttttaagtgtttttggtgt-tgttcttctaccagaattgga--gtttcatct--------------------
||| ||||||| || || |  |||||||| |||||||||||| | |||||||||||||| |||||   |||| ||||||| |||||||||||  |  ||||||   |       |  || |   ||| | ||| |||  ||     ||      |||||| |  ||||| ||| | | ||||||| |   ||  || ||  | || |  |                    
AAGTTGGACTCGCAGAGTAGAGAGTTGCTGACTTGGGCTCTGGTGAAAGTGGCTCAGCCGGGTGACCGTGTGATTGCTCTGCATGTTCTTGGTCACAATGgtaagtatggtttgagtacgaatttatttatttatttttattttttttgtgtttcattttgtgggtgttcttgctttctgttcttttgggaggttttgatgggttgaagtgaagtttgtctgatttggag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213606620|gb|DB959046.1|DB959046
EST:     TGCTCAGCCCGGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATG                         AAATTGTGAATCGAGAAGGGAAATCCTCGTTGTTTTCACTTGTCAAAGCAT
genomic: GGCTCAGCCCGGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGgtataaacaa ... gttggtgtagAAATTGTGAATCGAGAAGGGAAATCCTCGTTGTTTTCACTTGTCAAAGCAT
EST: gi|209722125|gb|BW672374.1|BW672374
EST:     GGCTCAGCCCGGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATG                         AAATTGTGAATCGAGAAGGGAAATCCTCGTTGTTTTCACTTGTCAAAGCAT
genomic: GGCTCAGCCCGGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGgtataaacaa ... gttggtgtagAAATTGTGAATCGAGAAGGGAAATCCTCGTTGTTTTCACTTGTCAAAGCAT
EST: gi|208064525|gb|GD862483.1|GD862483
EST:     GGCTCAGCCCGGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATG                         AAATTGTGAATCGAGAAGGGAAATCCTCGTTGTTTTCACTTGTCAAAGCAT
genomic: GGCTCAGCCCGGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGgtataaacaa ... gttggtgtagAAATTGTGAATCGAGAAGGGAAATCCTCGTTGTTTTCACTTGTCAAAGCAT
EST: gi|209714647|gb|BW671567.1|BW671567
EST:     GGCTCAGCCCGGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATG                         AAATTGTGAATCGAGAAGGGAAATCCTCGTTGTTTTCACTTGTCAAAGCAT
genomic: GGCTCAGCCCGGTGATGTTGTGCTTGCTCTTCATGTTCTTGGGAATGATGgtataaacaa ... gttggtgtagAAATTGTGAATCGAGAAGGGAAATCCTCGTTGTTTTCACTTGTCAAAGCAT