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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAATATAGTAATGCTTTTGGGTTACTGTTTCAAAGATAGGCTAAACATTTTGGTATATGAGTATATTTGCAACAAGTCTCTTGATTGGCATTTAGTTGgtaagtactaaagttgtttttttctttttacttgtttttgttgaaatataaatttgattttgaccctcatttatccaaacagaagatcaattcttagaaa...

Basic information

species Glycine max
transcript GLYMA13G09340.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G09340.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os01g65940.1 (Oryza sativa), 5'ss of exon 5
AAGAATATAGTAATGCTTTTGGGTTACTGTTTCAAAGATAGGCTAAACATTTTGGTATATGAGTATATTTGCAACAAGTCTCTTGATTGGCATTTAGTTGgtaagtactaaagttgtttttttctttttacttgtttttgttgaaatataaatttgattttgaccctcatttatccaaacagaagatcaattcttagaaa
   ||||| || |||||  | || || |||| |||||| ||    ||||||||||| |||||||| || |||||||| || ||||| ||||||||| ||||||||  || | |||| | |        || ||  | ||||  | ||  |   | | |  |   | |   |  ||     |  | ||             
CGAAATATTGTCATGCTGCTTGGGTATTGTTGCAAAGAAAGCTACAACATTTTGGTGTATGAGTACATATGCAACAAATCCCTTGAGTGGCATTTATTTGgtaagagctta-gttgatgtgcagaaagtaatttatattgtgaagatgaagggtggctaatttactttgctcgtcacttgatgaaatag-----------

upper sequence: GLYMA13G09340.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G100454_T03 (Zea mays), 5'ss of exon 5
AAGAATATAGTAATGCTTTTGGGTTACTGTTTCAAAGATAGGCTAAACATTTTGGTATATGAGTATATTTGCAACAAGTCTCTTGATTGGCATTTAGTTGgtaagtactaaagttgtttttttctttttact--tgtttttgttgaaatataaatttgattttgaccctcatttatccaaacagaagatcaattcttagaaa
   ||||| || |||||  | || ||||| | |||||| ||    ||||| ||||| ||||||||||| |||||||| ||||| || ||||||||| |||||| ||  |  |  || ||    |||   |    |  |  ||     ||   |   | | |||| | ||  ||  |      | |                 
CGAAATATTGTCATGCTGCTTGGGTACTGCTGCAAAGAAAGCTATAACATCTTGGTGTATGAGTATATATGCAACAATTCTCTCGAGTGGCATTTATTTGgtatgtggttgatatgcttaaaacttcaaaagaataataatgcgatgatgacaggcttactttg-ctcttgttacttggtggaaacag--------------

upper sequence: GLYMA13G09340.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g14990.t01 (Vitis vinifera), 5'ss of exon 6
AAGAATATAGTAATGCTTTTGGGTTACTGTTTCAAAGATAGGCTAAACATTTTGGTATATGAGTATATTTGCAACAAGTCTCTTGATTGGCATTTAGTTGgtaagta----------ctaaagttgtttttttctttttactt--gtttttgttgaaatataaatttgattttgaccctcatttatccaaacagaagatcaattcttagaaa--------------------------------
||||| || || ||||| |||||||| |||| ||| || |   | || || ||||| ||||||||||| ||||||||||||||||| ||||| ||| |||||||| |          ||| || | |    | | ||  |  |   ||||| |  |  | |       |||    | ||  ||    | | |  || || |||  |||                                    
AAGAACATTGTGATGCTCTTGGGTTATTGTTGCAAGGAGAACTTTAATATCTTGGTGTATGAGTATATCTGCAACAAGTCTCTTGAATGGCACTTATTTGgtaagcaactgtacagactacaggtttcaaatccattccatctcaatttttttctaggtctttcaccaattcaatcacttgtt--ctctatcccaaaattaatcgttaattgccttcttttaatttttgcaatgatttttatag