Sequence
atgc intronic sequence ATGC exonic sequenceAACTGATTTAGTTAGCATGGACTGGAAGAAAATGAAGATTCCGCCAGTTCTTCCTTCTTCAGAACATGCATGGTTGTTCAAGTTGATGCAGCCAATGAAGgtgattttttttaatgcacactgtcttttatgatttttcttttcttgaaatagatgtatatctccttcaattgctgaatgtcaatgaactagtcaaccta...
Basic information
species | Glycine max |
transcript | GLYMA13G08390.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G08390.1 (Glycine max), 5'ss of exon 1
lower sequence: AT5G24120.1 (Arabidopsis thaliana), 5'ss of exon 2
AACTGATTTAGTTAGCATGGACTGGAAGAAAATGAAGATTCCGCCAGTTCTTCCTTCTTCAGAACATGCATGGTTGTTCAAGTTGATGCAGCCAATGAAGgtgatttttttt-------aatgcacactgtcttttat-----gatttttcttttcttgaaa--tagatgtatatctcctt--caat---tgctgaa--tgtcaatgaactagtcaaccta-
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TAATGATATAGTGAGCTTGGACTGGAAAAAAATGAAGATACCTCCTGTTCTTTCTTCTACTGAACATGCTTGGTTGTTCAAGTTGATGCAACCTATGAAGgtattcttctcttttcttgaaattagtatgtattctatagatagatgatgattcactaggaagctggaatcggattttcattgcaatacatgctcaagttgtttggggctttaacattgtag
upper sequence: GLYMA13G08390.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv16s0050g02520.t01 (Vitis vinifera), 5'ss of exon 2
AACTGATTTAGTTAGCATGGACTGGAAGAAAATGAAGATTCCGCCAGTTCTTCCTTCTTCAGAACATGCATGGTTGTTCAAGTTGATGCAGCCAATGAAGgtgattttttttaatgcacactgtcttttatgatttttcttttcttgaaatagatgtatatctccttcaattgctgaatgtcaatgaactagtcaaccta-------------------
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TACTGACTTGGTCAGTTTGGACTGGAAGAAAATGAAGATACCACCCGTGCTTCCTCCCTCAGAGCATGCATGGCTATTCAAGCTAATGCAGCCCATGAAGgtgagccttta-atttctcactaagatat-cggtctttaattgg--ggaatcggtttttactttctctttctcaagaattagtatttacttgctgctaaatatgtttactttgatttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207847719|gb|GD818716.1|GD818716EST: TTCCTTCTTCAGAACATGCATGGTTGTTCAAGTTGATGCAGCCAATGAAG GCACTCCTACAAGCAAAAGAAGATTTAAAGGAAGTGGATAAAGAAATTACA
genomic: TTCCTTCTTCAGAACATGCATGGTTGTTCAAGTTGATGCAGCCAATGAAGgtgatttttt ... tattgttcagGCACTCCTACAAGCAAAAGAAGATTTAAAGGAAGTGGATAAAGAAATTACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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AACTGATTTAGTTAGCATGGACTGGAAGAAAATGAAGATTCCGCCAGTTCTTCCTTCTTCAGAACATGCATGGTTGTTCAAGTTGATGCAGCCAATGAAGgtgattttttttaatgcacactgtcttttatgatttttcttttcttgaaatagatgtatatctccttcaattgctgaatgtcaatgaactagtcaaccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc