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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGAAGATCCAAAAACAATAGGAAAAAATAAATGATGGCTCACTGTGTTTTCCCTGTTAATGCACTTCCTACTCCTTCACCATGTTTCCACTCCAAAGgtactccccttcatactttctatgatcagtattgtaattctctacaagcagttaaatctgcattccactaattttcagcagatacagctaaagggtttta...

Basic information

species Glycine max
transcript GLYMA13G07130.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209702928|gb|BW667450.1|BW667450
EST:     TTTCCCTGTTAATGCACTTCCTACTCCTTCACCATGTTTCCACTCCAAAG                         TTGGAAAGCAATGGCCTCAGGGATTTGCCTTGAGTGTGAGGCCAACGAATC
genomic: TTTCCCTGTTAATGCACTTCCTACTCCTTCACCATGTTTCCACTCCAAAGgtactcccct ... ttaacttcagTTGGAAAGCAATGGCCTCAGGGATTTGCCTTGAGTGTGAGGCCAACGAATC
EST: gi|213598671|gb|DB964265.1|DB964265
EST:     TTTCCCTGTTAATGCACTTCCTACTCCTTCACCATGTTTCCACTCCAAAG                         TTGGAAAGCAATGGCCTCAGGGATTTGCCTTGAGTGTGAGGCCAACGAATC
genomic: TTTCCCTGTTAATGCACTTCCTACTCCTTCACCATGTTTCCACTCCAAAGgtactcccct ... ttaacttcagTTGGAAAGCAATGGCCTCAGGGATTTGCCTTGAGTGTGAGGCCAACGAATC
EST: gi|151406911|gb|EV276726.1|EV276726
EST:     TTTCCCTGTTAATGCACTTCCTACTCCTTCACCATGTTTCCACTCCAAAG                         TTGGAAAGCAATGGCCTCAGGGATTTGCCTTGAGTGTGAGGCCAACGAATC
genomic: TTTCCCTGTTAATGCACTTCCTACTCCTTCACCATGTTTCCACTCCAAAGgtactcccct ... ttaacttcagTTGGAAAGCAATGGCCTCAGGGATTTGCCTTGAGTGTGAGGCCAACGAATC
EST: gi|10845360|gb|BF071088.1|BF071088
EST:     TTTCCCTGTTAATGCACTTCCTACTCCTTCACCATGTTTCCACTCCAAAG                         TTGGAAAGCAATGGCCTCAGGGATTTGCCTTGAGTGTGAGGCCAACGAATC
genomic: TTTCCCTGTTAATGCACTTCCTACTCCTTCACCATGTTTCCACTCCAAAGgtactcccct ... ttaacttcagTTGGAAAGCAATGGCCTCAGGGATTTGCCTTGAGTGTGAGGCCAACGAATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTTGAAGATCCAAAAACAATAGGAAAAAATAAATGATGGCTCACTGTGTTTTCCCTGTTAATGCACTTCCTACTCCTTCACCATGTTTCCACTCCAAAGgtactccccttcatactttctatgatcagtattgtaattctctacaagcagttaaatctgcattccactaattttcagcagatacagctaaagggtttta

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