1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTGTTTTGGCCATTGATGATGAGACCAAAGAGAGAATTGGATCCTCTTCCCATGTGGGGTTGCTCGGGCCTGATGGAGATTGTGTTGCAATTCTTCGAAGgttagttagtcttatggcatttttattattttttgtttgcttctggttggtgtttaatttgttgttgattgttctattgtggtgttgtgtgaattttggt...
species | Glycine max |
transcript | GLYMA13G06940.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATGTGGGGTTGCTCGGGCCTGATGGAGATTGTGTTGCAATTCTTCGAAG TATTGAAATCTACAAGCATAACAAGGAAGAAAGAATAGCTAGAACTTGNGGEST: gi|298194161|gb|HO040809.1|HO040809
genomic: CATGTGGGGTTGCTCGGGCCTGATGGAGATTGTGTTGCAATTCTTCGAAGgttagttagt ... tcctatgcagTATTGAAATCTACAAGCATAACAAGGAAGAAAGAATAGCTAGAACTTGGGG
EST: CATGTGGGGTTGCTCGGGCCTGATGGAGATTGTGTTGCAATTCTTCGAAG TATTGAAATCTACAAGCATAACAAGGAAGAAAGAATAGCTAGAACTTGGGGEST: gi|6094685|gb|AW119405.1|AW119405
genomic: CATGTGGGGTTGCTCGGGCCTGATGGAGATTGTGTTGCAATTCTTCGAAGgttagttagt ... tcctatgcagTATTGAAATCTACAAGCATAACAAGGAAGAAAGAATAGCTAGAACTTGGGG
EST: CATGTGGGGTTGCTCGGGCCTGATGGAGATTGTGTTGCAATTCTTCGAAG TATTGAAATCTACAAGCATAACAAGGAAGAAAGAATAGCTAGAACTTGGGG
genomic: CATGTGGGGTTGCTCGGGCCTGATGGAGATTGTGTTGCAATTCTTCGAAGgttagttagt ... tcctatgcagTATTGAAATCTACAAGCATAACAAGGAAGAAAGAATAGCTAGAACTTGGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTTTTGGCCATTGATGATGAGACCAAAGAGAGAATTGGATCCTCTTCCCATGTGGGGTTGCTCGGGCCTGATGGAGATTGTGTTGCAATTCTTCGAAGgttagttagtcttatggcatttttattattttttgtttgcttctggttggtgtttaatttgttgttgattgttctattgtggtgttgtgtgaattttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT