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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTCGCCATTTGGTTTCGCTCTTCCTCTGTTTCCTCTGTTTCGAGATCTCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCACgtaatgacgataataccgcacacccttttgccccctttttctctctctctctctctgttggcgaaggcatgcaaaatttgaccttttgtttgtttttgatttgtttgtgttggttttttcag

Basic information

species Glycine max
transcript GLYMA13G04940.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298189073|gb|HO037476.1|HO037476
EST:     TCTGTTTCCTCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCAC                         GCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGCGAAGTTTGA
genomic: TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCACgtaatgacga ... gttttttcagGCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
EST: gi|192303526|gb|FG995932.1|FG995932
EST:     TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCAC                         GCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
genomic: TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCACgtaatgacga ... gttttttcagGCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
EST: gi|298195533|gb|HO043924.1|HO043924
EST:     TCTGTTTCCTCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCAC                         GCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
genomic: TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCACgtaatgacga ... gttttttcagGCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
EST: gi|298175821|gb|HO018418.1|HO018418
EST:     TCTGTTTCCTCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCAC                         GCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
genomic: TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCACgtaatgacga ... gttttttcagGCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
EST: gi|192298241|gb|FG991717.1|FG991717
EST:     CCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCAC                         GCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
genomic: TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCACgtaatgacga ... gttttttcagGCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
EST: gi|213603274|gb|DB970395.1|DB970395
EST:     TCTGTTTCCTCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCAC                         GCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
genomic: TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCACgtaatgacga ... gttttttcagGCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
EST: gi|120491083|gb|EH219250.1|EH219250
EST:     TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCAC                         GCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
genomic: TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCACgtaatgacga ... gttttttcagGCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
EST: gi|192298016|gb|FG993250.1|FG993250
EST:     TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCAC                         GCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
genomic: TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCACgtaatgacga ... gttttttcagGCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
EST: gi|151394021|gb|EV263892.1|EV263892
EST:     TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCAC                         GCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
genomic: TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCACgtaatgacga ... gttttttcagGCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
EST: gi|23062388|gb|BU578509.1|BU578509
EST:     TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCAC                         GCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
genomic: TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCACgtaatgacga ... gttttttcagGCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
EST: gi|151407677|gb|EV277492.1|EV277492
EST:     TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCAC                         GCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
genomic: TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCACgtaatgacga ... gttttttcagGCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
EST: gi|151395404|gb|EV265281.1|EV265281
EST:     TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCAC                         GCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
genomic: TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCACgtaatgacga ... gttttttcagGCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
EST: gi|120530553|gb|EH258686.1|EH258686
EST:     TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCAC                         GCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA
genomic: TCTGTTTCATCAATTCGATTGCCCGGTTTGGACCAAGACGCCAAGGCCACgtaatgacga ... gttttttcagGCATGGATCGGTGCTTAGGTTGAACAGAGGAGGCTCTTCAGTGAAGTTTGA