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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTAAAATCAACGAGGATTTCTACAGCCGCACGCTCTCCGGCGGTGTCATCACTCTCGCTTCCTCCATTCTCATGCTCTTGCTCTTCTACTCCGAGCTCCgtacgacacctttctctcgtcgttttcattcttttaaaacttctaatcgaaactcattgtcgtttttgccactgcctccag

Basic information

species Glycine max
transcript GLYMA13G01920.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G01920.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os04g38340.1 (Oryza sativa), 5'ss of exon 1
CCTAAAATCAACGAGGATTTCTACAGCCGCACGCTCTCCGGCGGTGTCATCACTCTCGCTTCCTCCATTCTCATGCTCTTGCTCTTCTACTCCGAGCTCCgtacgacacctttctctcgtcgttttcattcttttaaaacttctaatcgaaactcattgtcgtttttgccactgcctccag----------------------
|| ||  | |||||||| ||||||||||||||||||||||||||  ||||||| ||||| |||||| |  |||||||| | ||||||  |||||||||||||||| | |||  |||||  |    ||  ||  |   | ||||  ||| |    |  ||   | |   ||   |||||| |                      
CCCAAGGTGAACGAGGACTTCTACAGCCGCACGCTCTCCGGCGGCATCATCACGCTCGCCTCCTCCGTCGTCATGCTCCTCCTCTTCGTCTCCGAGCTCCgtacgcctcctcgctctcccctccctccctccctctca-cttccgatctagttccgctgc--tctcaaccctagcctccggatgggtgcctttggagatccga

upper sequence: GLYMA13G01920.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G071768_T04 (Zea mays), 5'ss of exon 1
CCTAAAATCAACGAGGATTTCTACAGCCGCACGCTCTCCGGCGGTGTCATCACTCTCGCTTCCTCCATTCTCATGCTCTTGCTCTTCTACTCCGAGCTCCgtacgacacctttctctcgtcgttttcattcttttaaaacttctaatcgaa-actcattgtcgtttttgccactgcct--ccag-----------------
|| ||  | |||||||| |||||||||||||| |||||||||||  ||||||| ||||  |||||   | |||||||| | ||||||  |||||||||||||||| |  ||| |  |   | | |||   |   |    | || |       |||  |   ||||||||  |  | ||    ||                 
CCCAAGGTGAACGAGGACTTCTACAGCCGCACCCTCTCCGGCGGCATCATCACGCTCGTCTCCTCTGCTGTCATGCTCCTCCTCTTCGTCTCCGAGCTCCgtacg-cgtcttgccttttccttgttctccccccttgctcctcgatctaggtacttgtacccgtttttgagatcggctggttaggtttgaccgcgtgggtg

upper sequence: GLYMA13G01920.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv18s0001g05270.t01 (Vitis vinifera), 5'ss of exon 1
CCTAAAATCAACGAGGATTTCTACAGCCGCACGCTCTCCGGCGGTGTCATCACTCTCGCTTCCTCCATTCTCATGCTCTTGCTCTTCTACTCCGAGCTCCgtacgacacctttctctcgt--cgttttcattct----tttaaaacttctaat---cgaaactcattgtcgtttttgccactgcctccag----------
||||| ||||||||||||||||||||||| || |||||||| || || || || ||||| || || ||| | |||||||||||||||  |||||||||| ||  |    || || ||||   ||  |  ||| |    |||||   || || |    |||||| ||||    |      | ||  |              
CCTAAGATCAACGAGGATTTCTACAGCCGTACACTCTCCGGTGGCGTTATTACCCTCGCCTCATCTATTTTTATGCTCTTGCTCTTCATCTCCGAGCTCAgtttgtactctctccctcgatacgcatatattttagggtttaatgattttattgtttgaaacttattggatctggaattattgttttgttatatgggtgt

upper sequence: GLYMA13G01920.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ06790 (Selaginella moellendorffii), 5'ss of exon 1
CCTAAAATCAACGAGGATTTCTACAGCCGCACGCTCTCCGGCGGTGTCATCACTCTCGCTTCCTCCATTCTCATGCTCTTGCTCTTCTACTCCGAGCTCCgtacgacacctttctctcgtcgttttcattcttttaaa-acttctaatcgaaactcattgtcgtttttgccactgcctccag
|| || ||||| ||||| ||| ||||||||||||| ||||| || ||||||||| | |  ||||||||| |||||    | ||||||  | | |||||  |||||    ||||         |  || |||| |  |  || | |        ||  |||| |                   
CCCAAGATCAATGAGGACTTCCACAGCCGCACGCTGTCCGGGGGAGTCATCACTGTTGTCTCCTCCATTTTCATGGCGATCCTCTTCATCACGGAGCTTAgtacgtggtcttttgtatcaattgctcgttctatggatcacgtttggctttggct--ttgtag-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058723|gb|CA801637.1|CA801637
EST:     CACTCTCGCTTCCTCCATTCTCATGCTCTTGCTCTTCTACTCCGAGCTCC                         GGTTGTATCTTCACGCTGTCACCGAGACCAAGCTTGTCGTCGACACTTCCA
genomic: CACTCTCGCTTCCTCCATTCTCATGCTCTTGCTCTTCTACTCCGAGCTCCgtacgacacc ... ctgcctccagGGTTGTATCTTCACGCTGTCACCGAGACCAAGCTTGTCGTCGACACTTCCA
EST: gi|192304272|gb|FG996426.1|FG996426
EST:     CACTCTCGCTTCTTCCATTCTCATGCTCTTGCTCTTCTACTCCGAGCTCC                         GGTTGTATCTTCACGCTGTCACCGAGACCAAGCTTGTCGTCGACACTTCCA
genomic: CACTCTCGCTTCCTCCATTCTCATGCTCTTGCTCTTCTACTCCGAGCTCCgtacgacacc ... ctgcctccagGGTTGTATCTTCACGCTGTCACCGAGACCAAGCTTGTCGTCGACACTTCCA