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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTAGTGTTTACCAAATTGTTTTCCTCTCTTTTCGGTAACAAGGAAGCTCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcctacctctctgcttctctccctcaccatccgatttgaattttctgtttctcgaattgattcgttcgattttattactttccttttcag

Basic information

species Glycine max
transcript GLYMA13G01270.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G01270.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os08g15040.2 (Oryza sativa), 5'ss of exon 1
GGATTAGTGTTTACCAAATTGTTTTCCTCTCTTTTCGGTAACAAGGAAGCTCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcctacctctctgcttctctccctcaccatccgatttgaattttctgtttctcgaat-tgattcgttcgattttattactttc-cttttcag
||  | || || ||     | || || ||  | ||||| |||   || || || |||||||| ||||||||||||||||||||||| ||||| || || |||| ||   | ||||| |  |    |||| ||   ||   || |      |||    |||| || ||||  |   | || | ||  |||  | |  |||
GGCATCGTCTTCACGCGGCTCTTCTCGTCGGTCTTCGGCAACCGCGAGGCCCGCATCCTCGTCCTCGGCCTCGACAATGCCGGCAAGACCACCATCCTATgtaagc---ccacctcgccccccgactccatcga-atgtaatctcg-ccgtctccacctcggatctgatctgggtgcttgtgtttttttttcctcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192319248|gb|FK009132.1|FK009132
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|192313159|gb|FK003279.1|FK003279
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|26047527|gb|CA784291.1|CA784291
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|192299620|gb|FG990002.1|FG990002
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|7042626|gb|AW472520.1|AW472520
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|192308422|gb|FK000918.1|FK000918
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|298163498|gb|HO012231.1|HO012231
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|192306665|gb|FG998077.1|FG998077
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|12488647|gb|BG042170.1|BG042170
EST:     TCGAATCCTCGTTCT-NGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|192326406|gb|FK017693.1|FK017693
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|10848119|gb|BF070667.1|BF070667
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|15813778|gb|BI786053.1|BI786053
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|9565450|gb|BE474959.1|BE474959
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|298165965|gb|HO008936.1|HO008936
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCACCATTCCAA
EST: gi|208096947|gb|GD894222.1|GD894222
EST:     TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCT                         ATCGGCTTCAGATGGGCGAAGTTGTCTCCAACCATTCCAA
genomic: TCGAATCCTCGTTCTCGGCCTCGACAATGCCGGCAAAACCACTATTCTCTgtacgcttcc ... tccttttcagATCGGCTTCAGATGGGCGAAGTTGTCTCCA-CCATTCCAA