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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTATCGAGAAGCTTCCCGAAATCGAGGTCGACGACGGCACCAAGAAGGTCACCATCTTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAGgtataattattaaaactcaatagttacattttctctctctctctctctctctctctctgtttcttctgaacctcgttttaattgaatttttcgtttcaacag

Basic information

species Glycine max
transcript GLYMA13G00990.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os08g14570.1 (Oryza sativa), 5'ss of exon 1
CGTTATCGAGAAGCTTCCCGAAATCGAGGTCGACGACGGCACCAAGAAGGTCACCATCTTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAGgtataattattaaaactcaatagttacattttctctctctctctctctctctctct--ctgtttcttctgaacctcgttttaattgaatttttcgtttcaacag-
|      | |         ||   ||  | || |||||| |  |||  ||||||| ||||||||||||| || |||||||||||||| ||||||||||||||||    ||  |   || || | |||    ||    |     |   |           ||||||   |      ||||  || | | |    |  |        
CTCCGCGGCGGCCGGGGAGGAGGCCGGCGGCGCCGACGGGAGGAAGCGGGTCACCGTCTTCTTCGGCACGCAGACCGGCACCGCCGAGGGCTTCGCCAAGgtat--ccatcca---tcgattgctaccccatcatgatgatgatgaattgacggtgaattgtttcgaattgtttgcgttcgaaataattccaacaatattgggat

upper sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G144407_T01 (Zea mays), 5'ss of exon 2
CGTTATCGAGAAGCTTCCCGAAATCGAGGTCGACGACGGCACCAAGAAGGTCACCATCTTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAGgtataattattaaaactcaatagttacattttctctctctctctctctctctctctctgtttcttctga-acctcgttttaattgaatttttcgtttcaacag
      |||| ||      || |    || |||||||||||  |||||||||||| ||||||||||||| || |||||||||||||| || |||||||||||     |      |  |    | | |||     ||    |    | ||| |||  | ||       |  |||       |  |    | || |||||  |  
GAGCGCCGAGGAGGAGGAGGAGAAGCCGGCCGACGACGGCAGGAAGAAGGTCACCGTCTTCTTCGGCACGCAGACCGGCACCGCCGAGGGGTTCGCCAAGgtgcgtgtgc-gtcatgcgtgcgctgcatgcctgctgcaaccaaatttct-tcttacggtaatgagagttaccgaaagacaggtcgcctcttagtttctccc-

upper sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 1
lower sequence: AC217947.4_FGT002 (Zea mays), 5'ss of exon 1
CGTTATCGAGAAGCTTCCCGAAATCGAG------GTCGACGACGGCACCAAGAAGGTCACCATCTTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAGgtataattattaaaactcaatagttacattttctctctctctctctctctc-tctctctgtttcttctgaacctcgttttaattgaatttttcgtttcaacag
      ||  |||    ||||    |||      | |||||||||||  || ||||||||| ||||||||||||| || ||||||||| |||| || || ||||||||              |     |  | |       ||  ||    |||||  | ||||   |     |   |||||| ||    || || |  ||    |   
------CGGTAAGGCCGCCGAGGAGGAGAAGCCGGCCGACGACGGCAGGAAAAAGGTCACCGTCTTCTTCGGCACGCAGACCGGCACCTCCGAGGGGTTTGCCAAGgtgcgtcatgcgcgcgttgcctgccataaaccagatcaatcgtcatctcttatgtctcctgtatagtttctcctcgtgtttgacgacttctaggtggtga---

upper sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv11s0052g00880.t01 (Vitis vinifera), 5'ss of exon 1
CGTT-ATCGAGAAGCTTCCCGAAATCGAGGTCGACGACGGCACCAAGAAGGTCACCATCTTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAGgtataattattaaaactcaatagttacattttctctctctc-tctctctctctctctctg---tttcttctgaacctcgttttaattgaatttttcgtttcaacag-----------------------------------------------------------------------------
 ||| || | ||||   |  ||| | ||||| || |||||||   |||||||||||||||||||||| || || || || || || ||||||||||| |||||    || |    ||| |    |   ||||   | |     | |     | |  |  ||   |   ||||     | | ||  ||  ||| ||  || |    |                                                                              
-GTTGATTGTGAAGGACCTGGAAGTGGAGGTGGATGACGGCAAGCAGAAGGTCACCATCTTCTTCGGAACACAGACGGGAACTGCGGAAGGCTTCGCTAAGgtgagcttttctttactgatccatggaatttatacacaaaaatttaggattatagccatgaaatcgtttcttggattgggttggatgaaatattgagtattcgaattaaactttttgtgagtgtattcttcctttttcttcctttttgtctttttattgagtgtgttgattcatgatgtgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715910|gb|BW650923.1|BW650923
EST:     TCACCATCTTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAG                         GCCATAGCGGAAGAGGCCAAGGCGCGATACGATAAGGCCACGTTCAGAGTA
genomic: TCACCATCTTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAGgtataattat ... gtttcaacagGCCATAGCGGAAGAGGCCAAGGCGCGATACGATAAGGCCACGTTCAGAGTA
EST: gi|209703526|gb|BW678268.1|BW678268
EST:     TCACCATCTTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAG                         GCCATAGCGGAAGAGGCCAAGGCGCGATACGATAAGGCCACGTTCAGAGTA
genomic: TCACCATCTTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAGgtataattat ... gtttcaacagGCCATAGCGGAAGAGGCCAAGGCGCGATACGATAAGGCCACGTTCAGAGTA
EST: gi|209729001|gb|BW655031.1|BW655031
EST:     TCACCATCTTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAG                         GCCATAGCGGAAGAGGCCAAGGCGCGATACGATAAGGCCACGTTCAGAGTA
genomic: TCACCATCTTCTTCGGCACTCAAACCGGCACCGCCGAAGGCTTCGCCAAGgtataattat ... gtttcaacagGCCATAGCGGAAGAGGCCAAGGCGCGATACGATAAGGCCACGTTCAGAGTA