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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCATAGTCCTGGTCCTCTATATAAACACGCGTCCCCACGCACCAACGCAGCCTGCACTTCTCAATCGCAAATTTTCTCCCCCAAATCGTAGATCTACGgtaaaattctttttccatcgctgcttccatttcattttcgcggattcccagatctgcatattcctctttctgcacccccgtgtatgttccccgattcgct...

Basic information

species Glycine max
transcript GLYMA12G35990.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209698282|gb|BW678040.1|BW678040
EST:     AGCCTGCACTTCTCAATCGCAAATTTTCTCCCCCAAATCGTAGATCTACG                         GTTAAATTGGTGTAGTGTGGTAAGATGGGAGGAGGATTTAGAGTGCTTCAC
genomic: AGCCTGCACTTCTCAATCGCAAATTTTCTCCCCCAAATCGTAGATCTACGgtaaaattct ... tttggtacagGTTAAATTGGTGTAGTGTGGTAAGATGGGAGGAGGATTTAGAGTGCTTCAC
EST: gi|254316195|gb|GR827732.1|GR827732
EST:     CCAAATCGTAGATCTACG                         GTTAAATTGGTGTAGTGTGGTAAGATGGGAGGAGGATTTAGAGTGCTTCAC
genomic: CCAAATCGTAGATCTACGgtaaaattct ... tttggtacagGTTAAATTGGTGTAGTGTGGTAAGATGGGAGGAGGATTTAGAGTGCTTCAC
EST: gi|193694074|gb|FK629834.1|FK629834
EST:     GCACTTCTTCAATTCGCAAATTTTCTCCCCCAAATCGCAGATCTACG                         GTTAAATTGGTGTAGTGTGGTAAGATGGGAGGAGGATTTAGAGCGCTTCAC
genomic: GCACTTC-TCAA-TCGCAAATTTTCTCCCCCAAATCGTAGATCTACGgtaaaattct ... tttggtacagGTTAAATTGGTGTAGTGTGGTAAGATGGGAGGAGGATTTAGAGTGCTTCAC
EST: gi|193345567|gb|FK313706.1|FK313706
EST:     CTTCTCAATCGCAAATTTTCTCCCCCAAATCGTAGATCTACG                         GTTAAATTGGTGTAGTGTGGTAAGAATAGGGAAGGAGGATTTAGAGTGCTT
genomic: CTTCTCAATCGCAAATTTTCTCCCCCAAATCGTAGATCTACGgtaaaattct ... tttggtacagGTTAAATTGGTGTAGTGTGGTAAG-AT-GGG-AGGAGGATTTAGAGTGCTT
EST: gi|193559781|gb|FK515028.1|FK515028
EST:     GCACTTCTCAATCGCAAATTTTCTCCCCCAAATCGTAGATCTACG                         GTTAAATTGGTGTAGTGTGGTAAGATGGGAGGAGGATTTAGAGTGCTTCAC
genomic: GCACTTCTCAATCGCAAATTTTCTCCCCCAAATCGTAGATCTACGgtaaaattct ... tttggtacagGTTAAATTGGTGTAGTGTGGTAAGATGGGAGGAGGATTTAGAGTGCTTCAC
EST: gi|298183216|gb|HO028201.1|HO028201
EST:     GCACTTCTCAATCGCAAATTTTCTCCCCCAAATCGTAGATCTACG                         GTTAAATTGGTGTAGTGTGGTAAGATGGGAGGAGGATTTAGAGTGCTTCAC
genomic: GCACTTCTCAATCGCAAATTTTCTCCCCCAAATCGTAGATCTACGgtaaaattct ... tttggtacagGTTAAATTGGTGTAGTGTGGTAAGATGGGAGGAGGATTTAGAGTGCTTCAC
EST: gi|213614652|gb|DB972864.1|DB972864
EST:     AGCCTGCACTTCTCAATCGCAAATTTTCTCCCCCAAATCGTAGATCTACG                         GTTAAATTGGTGTAGTGTGGTAAGATGGGAGGAGGATTTAGAGTGCTTCAC
genomic: AGCCTGCACTTCTCAATCGCAAATTTTCTCCCCCAAATCGTAGATCTACGgtaaaattct ... tttggtacagGTTAAATTGGTGTAGTGTGGTAAGATGGGAGGAGGATTTAGAGTGCTTCAC
EST: gi|193534162|gb|FK488659.1|FK488659
EST:     GCACTTCTCAATCGCAAATTTTCTCCCCCAAATCGTAGATCTACG                         GTTAAATTGGTGTAGTGTGGTAAGATGGGAGGAGGATTTAGAGTGCTTCAC
genomic: GCACTTCTCAATCGCAAATTTTCTCCCCCAAATCGTAGATCTACGgtaaaattct ... tttggtacagGTTAAATTGGTGTAGTGTGGTAAGATGGGAGGAGGATTTAGAGTGCTTCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATCATAGTCCTGGTCCTCTATATAAACACGCGTCCCCACGCACCAACGCAGCCTGCACTTCTCAATCGCAAATTTTCTCCCCCAAATCGTAGATCTACGgtaaaattctttttccatcgctgcttccatttcattttcgcggattcccagatctgcatattcctctttctgcacccccgtgtatgttccccgattcgct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccccc