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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGTCCCCACTGGAGAAGATCAGCCTCAGATAAGGAAACGAAACATAGGAATCGCTTTCTTTGCTCTTTCCCAACCCAATGGCTACTTCCATTAACAGgttttcccccatctctctctctctcacacacatactttctctcatgaaattcaatttaactttgtgaattttctcgtttgaagcagcag

Basic information

species Glycine max
transcript GLYMA12G35880.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213587683|gb|DB955545.1|DB955545
EST:     GGCTACTTCCATTAACAGCAG                       
genomic: GGCTACTTCCATT-A-A-CAGgttttccccc ... gaagcagc
EST: gi|213595140|gb|DB972074.1|DB972074
EST:     GAATCGCTTTCTTTGCTCTTTCCCAACCCAATGGCTACTTCCATTAACAGCAG                       
genomic: GAATCGCTTTCTTTGCTCTTTCCCAACCCAATGGCTACTTCCATT-A-A-CAGgttttccccc ... gaagcagc
EST: gi|17401548|gb|BM178330.1|BM178330
EST:     GAATCGCTTTCTTTGCTCTTTCCCAACCCAATGGCTACTTCCATTAACAG                         TGCTCTGGGGTGGAAACATTCCTCCTTGTTCGTACAATCTAATAATGGCTT
genomic: GAATCGCTTTCTTTGCTCTTTCCCAACCCAATGGCTACTTCCATTAACAGgttttccccc ... gaagcagcagTGCTCTGGGGTGGAAACATTCCTCCTTGTTCGTACAATCTAATAATGGCTT
EST: gi|209720358|gb|BW672166.1|BW672166
EST:     GGCTACTTCCATTAACAGCAG                       
genomic: GGCTACTTCCATT-A-A-CAGgttttccccc ... gaagcagc