1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGTGAGTGAGGATGACAAACTGATTGAGTATGATGCTCTTCTGCTGGATCGGTTCCTTGATATCCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACAgtgagtttttctttttttggctctcctaatttgatgtctttgttgttagattttgatttggttactcattgtttggtctctcatgtctcaattttgctgt...
species | Glycine max |
transcript | GLYMA12G35840.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGTTCCTTGATATCCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACA GTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCTEST: gi|9986303|gb|BE660411.1|BE660411
genomic: GGTTCCTTGATATCCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACAgtgagttttt ... tcttgtgcagGTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCT
EST: GGTTCCTTGATATCCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACA GTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCTEST: gi|213600849|gb|DB958427.1|DB958427
genomic: GGTTCCTTGATATCCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACAgtgagttttt ... tcttgtgcagGTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCT
EST: GGTTCCTTGATATCCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACA GTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCT
genomic: GGTTCCTTGATATCCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACAgtgagttttt ... tcttgtgcagGTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGAGTGAGGATGACAAACTGATTGAGTATGATGCTCTTCTGCTGGATCGGTTCCTTGATATCCTTCAAGATTTACATGGGGAGGATCTGAAGGAAACAgtgagtttttctttttttggctctcctaatttgatgtctttgttgttagattttgatttggttactcattgtttggtctctcatgtctcaattttgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcct