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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAGTATCCGAGAGACCCTTCACAACATGGCAAAAACGAGGCCAGGCAGAAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaagaaacccttttatcttttcagctacccagttgcgtaaatggcctcaaaatcgtttcttttgcgaagggaaggggagggaatggtttgaaaccatgtggctgttgcgatgattagtgaaaggtgttttgttttttttgttgtgttctgcag

Basic information

species Glycine max
transcript GLYMA12G35680.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35680.2 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G871463_T02 (Zea mays), 5'ss of exon 1
CAGAGTATCCGAGAGACCCTTCACAA-CATGGCAAAAACGAGGCCAGGCAGAAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaagaaacccttttatcttttcagctacccagttgcgtaaatggcctcaaaatcgtttcttttgcgaagggaaggggagggaatggtttgaaaccatgtggctgttgcgatgattagtgaaaggtgttttgttttttttgttgtgttctgcag
 |      |  |    | || |||   |||||| || |||| ||  || |  || ||||||||||| ||||||||| | |||||||||||| ||||    ||||||  |  | | |||   | |  ||  | ||         ||| |  ||  ||  |     | ||  ||| || |   | |  |||||                                                                      
-ACCCCTCCATATCCTCGCTCCACGGTCATGGCGAAGACGAAGCAGGGAAATAAGGACGTGGATTCGTACACCATCGGCGGCACCAACAAGGTCGTCTATGgtaatttcccgcatccccgatctggttgtatctgttttccc-cgtgagaggtatctga-----tgctgctgcaaatgtctgtgccgggaag---------------------------------------------------------------------

upper sequence: GLYMA12G35680.2 (Glycine max), 5'ss of exon 1
lower sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 1
CAGAGTATCCGAGAGACCCTTCACAAC-ATGGCAAAAACGAGGCCAGGCAGAAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaagaaacccttttatcttttcagctacccagttgcgtaaatggcctcaaaatcgtttcttttgcgaagggaaggggagggaatggtttgaaaccatgtggctgttgcgatgattagtgaaaggtgttttgttttttttgttgtgttctgcag
 |   ||    | ||| || |  |    ||||| || |||||||| || | || |||| ||||||| |||||||||| ||||||||||||| | || ||||||||        || |  | ||      |    |  | |||||||   ||   ||||||  | |   |    |  |     ||      ||| |||| |                                                             
-ATCTTAAGGAAAAGAACCCTAGCGGTGATGGCGAAGACGAGGCCTGGGAAAAGAGACTTGGATTCGTACACCATCAAAGGCACCAACAAGGTGGTGAGAGgtaa--------aatcggtgtacaaaagcgatgagactgttgcgttggtg--ttcaaaacggctgaatcattgtggtttttgg------atgttttgcag------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298165839|gb|HO008810.1|HO008810
EST:     AAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAG                         CTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCACCGTACG
genomic: AAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaa ... tgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCACCGTACG
EST: gi|298177201|gb|HO023448.1|HO023448
EST:     AAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAG                         CTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCACCGTACG
genomic: AAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaa ... tgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCACCGTACG
EST: gi|19269921|gb|BM886177.1|BM886177
EST:     AAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAG                         CTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCACCGTACG
genomic: AAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaa ... tgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCACCGTACG
EST: gi|298165969|gb|HO008940.1|HO008940
EST:     AAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAG                         CTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCACCGTACG
genomic: AAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaa ... tgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCACCGTACG
EST: gi|151409769|gb|EV279577.1|EV279577
EST:     AAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAG                         CTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCACCGTACG
genomic: AAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaa ... tgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCACCGTACG
EST: gi|298165053|gb|HO011102.1|HO011102
EST:     AAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAG                         CTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCACCGTACG
genomic: AAAAGACGTGGATTCCTACACCATCAGAGGCACCAACAAGATCGTAAGAGgtaatcgcaa ... tgttctgcagCTGGGGACTGTGTGCTGATGCGCCCCTCTGATACCAGCAAGCCACCGTACG