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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCTCACCTCTGGATCTGATCTGAGCACGGTGCCATGGATCGGTTGCTGAAAGCGGCGAGAGCCTCTGGTTCTCTCAACCTCTCCAATCGATCCCTCACgtaagccatagccaactctctccactgctccattcacttctacgccgtcgttttattcttccttttgtttccattcattcgtgcattgttttcgttgttctttcgatttgcag

Basic information

species Glycine max
transcript GLYMA12G35110.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35110.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g58030.1 (Oryza sativa), 5'ss of exon 1
-TTCCTCACCTCTGGATCTGATCTGAGCACGGTGCCATGGATCGGTTGCTGAAAGCGGCGAGAGCCTCTGGTTCTCTCAACCTCTCCAATCGATCCCTCACgtaagccatagccaactctctccactgctccattcacttctacgccgtcgttttattcttccttttgtttccattcattcgtgcattgttttcgttgttctttcgatttgcag
    || |   | |   ||| | ||     | |  |||||| ||| |||| ||| | || || |  || || || ||||||||||||||||||||||||| ||      |  |   ||     | | | |  ||   | ||  || | | |         ||   | || |  |  |   ||  || || |         |             
CGATCTGAGGCCGGAGGCTGCT-TGCTTCTGCTTGCATGGAGCGGGTGCTCAAATCCGCCAGGGAGTCGGGCTCCCTCAACCTCTCCAATCGATCCCTCAGgtgcattgtctctctctgctcgctcggttggatcgccatcggcgacatggacgatgatctctcctagtctgtagccgc-cgcccactgctcggacgcgacg------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308241|gb|FK002753.1|FK002753
EST:     AAAGCGGCGAGAGCCTCTGGTTCTCTCAACCTCTCCAATCGATCCCTCAC                         TGAAATTCCCGACGAGGTTTACCGGAATCTGGAGGGCCTCGGCGGCGGAGA
genomic: AAAGCGGCGAGAGCCTCTGGTTCTCTCAACCTCTCCAATCGATCCCTCACgtaagccata ... cgatttgcagTGAAATTCCCGACGAGGTTTACCGGAATCTGGAGGGCCTCGGCGGCGGAGA
EST: gi|15201297|gb|BI424797.1|BI424797
EST:     AAAGCGGCGAGAGCCTCTGGTTCTCTCAACCTCTCCAATCGATCCCTCAC                         TGAAATTCCCGACGAGGTTTACCGGAATCTGGAGGGCCTCGGCGGCGGAGA
genomic: AAAGCGGCGAGAGCCTCTGGTTCTCTCAACCTCTCCAATCGATCCCTCACgtaagccata ... cgatttgcagTGAAATTCCCGACGAGGTTTACCGGAATCTGGAGGGCCTCGGCGGCGGAGA
EST: gi|7327236|gb|AW620958.1|AW620958
EST:     AAAGCGGCGAGAGCCTCTGGTTCTCTCAACCTCTCCAATCGATCCCTCAC                         TGAAATTCCCGACGAGGTTTACCGGAATCTGGAGGGCCTCGGCGGCGGAGA
genomic: AAAGCGGCGAGAGCCTCTGGTTCTCTCAACCTCTCCAATCGATCCCTCACgtaagccata ... cgatttgcagTGAAATTCCCGACGAGGTTTACCGGAATCTGGAGGGCCTCGGCGGCGGAGA