Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAAAACTCAAAATCTAGTTTCATACTTTTTTTCTTCTTCTTGAAATGGCTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttcaatctcccacactgttgcttcttattcattgttttatgtactttttccaaagagataattgaaccatgacttttgtgtttgcag

Basic information

species Glycine max
transcript GLYMA12G35050.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209725924|gb|BW654749.1|BW654749
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|192305059|gb|FG994609.1|FG994609
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|16348018|gb|BI973613.1|BI973613
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|213600413|gb|DB970307.1|DB970307
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|209708169|gb|BW673832.1|BW673832
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|10233105|gb|BE802050.1|BE802050
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|14990851|gb|BI316524.1|BI316524
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|19053301|gb|BM731968.1|BM731968
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|10234968|gb|BE803856.1|BE803856
EST:     TCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: TCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|5126824|gb|AI748560.1|AI748560
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|193633607|gb|FK579693.1|FK579693
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|192328685|gb|FK023171.1|FK023171
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|192310122|gb|FK002562.1|FK002562
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|151407754|gb|EV277569.1|EV277569
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|193538501|gb|FK498955.1|FK498955
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|213619715|gb|DB967337.1|DB967337
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|213620068|gb|DB965388.1|DB965388
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|8404380|gb|BE060014.1|BE060014
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|213610336|gb|DB962950.1|DB962950
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|193599503|gb|FK552460.1|FK552460
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|120530690|gb|EH258823.1|EH258823
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|209711200|gb|BW683815.1|BW683815
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|193626648|gb|FK577100.1|FK577100
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|6666423|gb|AW277941.1|AW277941
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|209710111|gb|BW658887.1|BW658887
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|209704267|gb|BW683495.1|BW683495
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|298195992|gb|HO044383.1|HO044383
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCGTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
EST: gi|213593634|gb|DB971656.1|DB971656
EST:     CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAG                         GGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT
genomic: CTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttca ... gtgtttgcagGGAAAGAGTGGTGTGTCTCTCAAGGACTCCACCTTGTTCGGTCTTTCATTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTAAAACTCAAAATCTAGTTTCATACTTTTTTTCTTCTTCTTGAAATGGCTCTCCAGGCTGCTTCTCTTGTTCCTGCTTCTTTCTCGGTTCTTAAAGAGgtttgcttcaatctcccacactgttgcttcttattcattgttttatgtactttttccaaagagataattgaaccatgacttttgtgtttgcag

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