Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGTTCAGTATCTATGCCGCAAGGTCGCTGGCCACCATTTCTCTCTTCCAATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattcaacccactcactcacccatctccatttatttttttaaaatgttaattactttgttctgaattgaataaatttgattgattaatttttgcag

Basic information

species Glycine max
transcript GLYMA12G35000.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35000.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv19s0014g03290.t01 (Vitis vinifera), 5'ss of exon 1
CTCGTTCAGTATCTATGCCGCAAGGTCGCTGGCCACCATTTCTCTCTTCCAATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattcaacccactcactcacccatctccatttatttttttaaaatgttaattactttgttctgaattgaataaatttgattgattaatttttgcag
|| || |||||||| ||||| || || || || ||    || ||  |    || ||||  ||||| ||| |||||||||| ||||||||||||||||| ||| | |      | | | ||    | || | |||  |  || ||  ||        ||||||    ||   ||  ||||  |||      || |||||
CTGGTGCAGTATCTCTGCCGGAAAGTGGCCGGACAGGGGTTTTCATTGGAGATAATTGGCGAAATCGATCTGTACAAGTTTGACCCATGGGTTCTTCCCAgtgagt------attgattcgaaaacctgcgttttctgcttcaatttg------gatttgtttctgatc--atttatttacttg------ttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163923386|gb|EH039689.1|EH039689
EST:     AATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAGGCGATTTTCGGTGAGAAAGAGTGGTACTTTTTCAGCCCTAGAGACA
genomic: AATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattcaac ... atttttgcagGTAAGGCGATTTTCGGTGAGAAAGAGTGGTACTTTTTCAGCCCTAGAGACA
EST: gi|12490050|gb|BG043571.1|BG043571
EST:     AATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAGGCGATTTTCGGTGAGAAAGAGTGGTACTTTTTCAGCCCTAGAGACA
genomic: AATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattcaac ... atttttgcagGTAAGGCGATTTTCGGTGAGAAAGAGTGGTACTTTTTCAGCCCTAGAGACA
EST: gi|19271096|gb|BM887352.1|BM887352
EST:     AATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTTCCAA                         GTAAGGCGATTTTCGGTGAGAAAGAGTGGTACTTTTTCAGCCCTAGAGACA
genomic: AATCATTGCTGAAATTGATTTGTACAAGTTCGACCCATGGGTTCTTCCAAgtaattcaac ... atttttgcagGTAAGGCGATTTTCGGTGAGAAAGAGTGGTACTTTTTCAGCCCTAGAGACA