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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCGACCGACGGTGCTAGCCGCGCGCCCGTCGCGCATTGCCGAGTGCCTCGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgatgtttctttttgtatcgactctgttaaacgttgcgcttttttgtgatgtgtgtttttttttttttaatttgcatatatttgatgtgttgaa...

Basic information

species Glycine max
transcript GLYMA12G33380.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G33380.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os05g15520.1 (Oryza sativa), 5'ss of exon 1
--GGTCGACCGACGGTGCTAGCCGCGCGCCCGTCGCGCATTGCCGAGTGCCTCGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgatgtttctttttgtatcgactctgttaaacgttgcgcttttttgtgatgtgtgtttttttttttttaatttgcatatatttgatgtgttgaa-----
  || || ||  |||   | |   | |||||  ||||||| ||||||||||||||||||||||| |||||   |||  |||||||||| |||||||| || |||  |||| ||   |||||||  |   |  |  ||   |||    |  ||| ||   ||| | || ||| ||  | |||||| || |||| | | |||       
GGGGGCGGCC--CGGCCGTCGGATCTCGCCCCGCGCGCATCGCCGAGTGCCTCGTCGGCGACGAGACCGGGGTCATCGTCTTCACCGCCCGCAACGAGCAAGgt--gatgttgc--ctttttgactttgcgtttctacgagtttatttgatttttgcaatgtttgttatttgttaaattttgca-atgtttgttattttgcggatct

upper sequence: GLYMA12G33380.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G067522_T01 (Zea mays), 5'ss of exon 1
GGTCGACCGACGGTGCTAGCCGCGCGCCCGTCGCGCATTGCCGAGTGCCTCGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgatgtttctttttgtatcgactctgttaaacgttgcgcttttttgtgatgtgtgtttttttttttttaatttgca--tatatttgatgtgttgaa--
||   |||  | |      |  | ||| || ||||||| ||||||||||||||||| ||||| |||||  ||||  |||||||||| |||||||| || |||      | |||| |  |    ||     || |   | || |  ||   | |   ||  ||||| |  |      |       || ||||       ||    
GGCGCACCCGCCGCCGCCCCATCCCGCGCGCCGCGCATCGCCGAGTGCCTCGTCGGGGACGAGACCGGCGCCATCGTCTTCACCGCCCGCAACGACCAAGgtg----aacgtttgtcctcccctcctacgtgctctgccttccctttccctctatcgttcgttttctgctccgctgtggaggactagatttctctacctgcgac

upper sequence: GLYMA12G33380.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G825437_T04 (Zea mays), 5'ss of exon 1
GGTCGACCGACGGTGCTAGCCGCGCGCCCGTCGCGCATTGCCGAGTGCCTCGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgatgtttctttttgtatcgactctgttaaacgttgcgcttttttgtgatgtgtgtttttttttttttaatttgcata--tatttgatg-tgttgaa
||   |||  | |      |  | ||| || ||||||| ||||||||||||||||| ||||| |||||   |||  | |||||||| |||||||| || |||  |   |||||| |  |  | ||  |     |  |  |  |  |  | ||   ||  ||  |   |||  | |  |  ||    ||| ||| |  | |   
GGCGCACCCGCCGCCGCCTCGTCCCGCGCGCCGCGCATCGCCGAGTGCCTCGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtatgtttgtcctgctctccccctccctctatctatc--tcctctgctgtggatgactagatttcatgatctgccactgctatctgacgacgctac-

upper sequence: GLYMA12G33380.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM5G825437_T02 (Zea mays), 5'ss of exon 2
GGTCGACCGACGGTGCTAGCCGCGCGCCCGTCGCGCATTGCCGAGTGCCTCGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgatgtttctttttgtatcgactctgttaaacgttgcgcttttttgtgatgtgtgtttttttttttttaatttgcat--atatttgatg-tgttgaa
                          | || ||||||| ||||||||||||||||| ||||| |||||   |||  | |||||||| |||||||| || |||  |   |||||| |  |  | ||  |     |  |  |  |  |  | ||   ||  ||  |   |||  | |  |  ||    ||| ||| |  | |   
--------------------------CGCGCCGCGCATCGCCGAGTGCCTCGTCGGAGACGAGACCGGCGTCATCGTATTCACCGCCCGCAACGACCAAGgtgtgtgtatgtttgtcctgctctccccctccctctatctatc--tcctctgctgtggatgactagatttcatgatctgccactgctatctgacgacgctac-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20207619|gb|BQ133708.1|BQ133708
EST:     CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|8284407|gb|BE021966.1|BE021966
EST:     CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|23727873|gb|BU761970.1|BU761970
EST:     CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|254317296|gb|GR826241.1|GR826241
EST:     CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTC
genomic: CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTC
EST: gi|254317295|gb|GR826240.1|GR826240
EST:     CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|7233353|gb|AW568700.1|AW568700
EST:     CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|14196027|gb|BE657809.2|BE657809
EST:     CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|24136064|gb|BU926574.1|BU926574
EST:     CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|8285421|gb|BE022980.1|BE022980
EST:     CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|298168099|gb|HO013362.1|HO013362
EST:     CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|7146704|gb|AW508626.1|AW508626
EST:     CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|10255856|gb|BE823622.1|BE823622
EST:     CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
EST: gi|298185421|gb|HO030634.1|HO030634
EST:     CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGG                         TGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG
genomic: CGTCGGCGACGAAACCGGAACCATAATCTTCACCGCTCGCAACGAACAGGgtacgatgat ... ctttgtgcagTGGACCATATGAATGCTGGCGCAACTGTAATTCTGCGTAATGCAAAGATTG