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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGGTGCCCTAATTTGGGGGAGTGCTGGTCCGGAGGCGAGACCGGCACTGCCACCGCCACTATCATGATTCTCGGCGACACTTGTACTCGAGGTTGCAGgttataatccgatcatttcgttttatttttttttgtaattggggcatttggcgttggtcattcacttatttgtgtttagaaggtggctttgaggaaatgg...

Basic information

species Glycine max
transcript GLYMA12G32890.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G32890.1 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os04g38330.1 (Oryza sativa), 5'ss of exon 1
CTCGGTGCCCTAATTTGGGGGAGTGCTGGTCCGGAGGCGAGACCGGCACTGCCACCGCCACTATCATGATTCTCGGCGACACTTGTACTCGAGGTTGCAGgttataatccgatcatttcgttttatttttttttgtaattggggcatttgg--cgttggtcattcacttatttgtgtttagaaggtggctttgaggaaatgg
| || ||||| ||  | || |||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||| ||||| || || || || ||||||| | |     ||| | |  | || ||  |  ||| | | |  | |  |||   | || | |    ||| |  |  | || | || | | ||      ||| 
CGCGCTGCCCCAACCTCGGCGAGTGCTGGTCCGGCGGCGAGACCGGCACCGCCACCGCCACCATCATGATCCTCGGGGACACCTGCACGCGCGGCTGCAGgtaagagattaatcctct--tcttgttgctgcttgcattagatgtagctgggctgctgcttagatccttttcggattgtacatggagaccttactatcatgt

upper sequence: GLYMA12G32890.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G071714_T01 (Zea mays), 5'ss of exon 1
CTCGGTGCCCTAATTTGGGGGAGTGCTGGTCCGGAGGCGAGACCGGCACTGCCACCGCCACTATCATGATTCTCGGCGACACTTGTACTCGAGGTTGCAGgttataatccgatcat-ttcgttttatttttttttgtaattggggcatttggcgttggtcattcacttatttgtgtttagaaggtggctttgaggaaatgg-
| |||||||| ||  | || |||||||||||||| |||||||| ||||| ||||||||||| || ||||| || || ||||| || || || || ||||||| | |      ||||  || ||||  |  ||   |||    || |   || | | | |  ||    | |  | || |  |   |   |       | | | 
CCCGGTGCCCCAACCTCGGCGAGTGCTGGTCCGGCGGCGAGACTGGCACCGCCACCGCCACAATTATGATCCTTGGGGACACCTGCACGCGCGGATGCAGgtaagagattcgtcatgctcatttttctgcttgcagtaccgtggacggatg-cttagatgtttaggctgtgcg-gtctgaacctttattgcactatattcgg

upper sequence: GLYMA12G32890.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv00s0445g00020.t01 (Vitis vinifera), 5'ss of exon 1
CTCGGTGCCCTAATTTGGGGGAGTGCTGGTCCGGAGGCGAGACCGGCACTGCCACCGCCACTATCATGATTCTCGGCGACACTTGTACTCGAGGTTGCAGgt---tataatccgatca-tttcgttttatttttttttgtaattggggcatttggcgttggtcattcacttatttgtgtttagaaggtggctttgaggaaatgg-
| || ||||| ||  |||| |||||||||||||| |||||||||||||||||||| || || ||||||||  | || ||||| || ||||| || |||||||   | | || |  ||| |||| |  | ||  ||||||||  |||    ||||  ||| |   ||   || ||||   ||     || | || |||    |   
CCCGCTGCCCCAACATGGGCGAGTGCTGGTCCGGTGGCGAGACCGGCACTGCCACTGCGACCATCATGATCTTGGGTGACACCTGCACTCGTGGATGCAGgtagttttgattccttcaatttcatgattttgatttttgtaggtggt---tttgatgtttgaatttttgttgtttgg--ttgtttcgttgattcgagatgctccg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21678354|gb|BQ630705.1|BQ630705
EST:     GCCACCGCCACTATCATGATTCTCGGCGACACTTGTACTCGAGGTTGCAG                         ATTTTGTAATGTTAAGACGTCAAGGACTCCTCCA
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACTTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACGTCAAGGACTCCTCCA
EST: gi|31561954|gb|CD487792.1|CD487792
EST:     GCCACCGCCACTATCATGATTCTCGGCGACACTTGTACTCGAGGTTGCAG                         ATTTTGTAATGTTAAGACGTCAAGGACTCCTCCACCACCTGACCCTGATGA
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACTTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACGTCAAGGACTCCTCCACCACCTGACCCTGATGA
EST: gi|15199935|gb|BI424084.1|BI424084
EST:     GCCACCGCCACTATCATGATTCTCGGCGACACTTGTACTCGAGGTTGCAG                         ATTTTGTAATGTTAAGACGTCAAGGACTCCTCCACCACCTGACCCTGATGA
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACTTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACGTCAAGGACTCCTCCACCACCTGACCCTGATGA
EST: gi|213600972|gb|DB968852.1|DB968852
EST:     GCCACCGCCACTATCATGATTCTCGGCGACACTTGTACTCGAGGTTGCAG                         ATTTTGTAATGTTAAGACGTCAAGGACTCCTCCACCACCTGACCCTGGTGA
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACTTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACGTCAAGGACTCCTCCACCACCTGACCCTGATGA
EST: gi|213592758|gb|DB957816.1|DB957816
EST:     GCCACCGCCACTATCATGATTCTCGGCGACACTTGTACTCGAGGTTGCAG                         ATTTTGTAATGTTAAGACGTCAAGGACTCCTCCACCACCTGACCCTGATGA
genomic: GCCACCGCCACTATCATGATTCTCGGCGACACTTGTACTCGAGGTTGCAGgttataatcc ... caattttcagATTTTGTAATGTTAAGACGTCAAGGACTCCTCCACCACCTGACCCTGATGA