Sequence
atgc intronic sequence ATGC exonic sequenceGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGAGATCAAGAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGgtgcgtctctctcaacgttttcccaaaccctaattttcttttcttttctttcttttaatttattattctttctttgcag
Basic information
species | Glycine max |
transcript | GLYMA12G32060.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G32060.4 (Glycine max), 5'ss of exon 1
lower sequence: LOC_Os02g47870.1 (Oryza sativa), 5'ss of exon 1
GCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCC---ACCAAGAAGCCGAAGCGTTTCGAGATCAAGAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGgt--gcgtctctctcaacgttttcccaaac--cctaattttcttttcttttctttctttta----atttattattctttctttgcag----------------------------
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---GCCGTGCCCCCCTCCATCGCCGGCGCCTCCTCCTCCGGGGCCAAGAAGGGCAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtccgcgtccgcgtccgccgatggcgcccgcgtctcgcttgttggctttctcgtgtgcgatctgatgcgattccgtcgcggttttcttcttcttcttcttctcgtgcag
upper sequence: GLYMA12G32060.4 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G361074_T01 (Zea mays), 5'ss of exon 1
GCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGAGATCAAGAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGgtgcgtctc--tctcaacgttttccca-aaccctaattttcttttcttttctttcttttaatttattattctttctttgcag-------------------------------------
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GGCAGCGTCGTCGTGCCCCCGGCCCCTGCCGCCGCCGCCGCGAAGAAGGCCAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgcatcgcgccatcgccacatggctctcgccctctgtgtttttttaattatatattttctcttgaattcgtgcgatttgacttggtttcggcctcgttttttgcgcccgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|4284798|gb|AI440826.1|AI440826EST: GAAGCGTTTCGAGATCAAGAAGTGGAATGCGGTTTCCCTCTGGGCTTGGG ATATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCT
genomic: GAAGCGTTTCGAGATCAAGAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGgtgcgtctct ... ttctttgcagATATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGAGATCAAGAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGgtgcgtctctctcaacgttttcccaaaccctaattttcttttcttttctttcttttaatttattattctttctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA