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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGCCATGTTGCGCATGTCACCTTTGATAGGTTCAATGGTTTCTTGGGCTTGCCTGTTGAGTTTGAACCTGAGGTCCCCAGAAGGCCTCCTAGTGCTAGgtgtgtgtttatgtccatgcatatatattaaaaggcatgaattgaagacacttgttcatcattgaattagagtcacatttctgatcgaatgcatgttggt...

Basic information

species Glycine max
transcript GLYMA12G31080.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G31080.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv06s0080g00580.t01 (Vitis vinifera), 5'ss of exon 1
TGCGCCATGTTGCGCATGTCACCTTTGATAGGTTCAATGGTTTCTTGGGCTTGCCTGTTGAGTTTGAACCTGAGGTCCCCAGAAGGCCTCCTAGTGCTAGgtgtgtgtttatgtccatgcatatatattaaaaggcatgaattgaagacacttgttcatcattgaattagagtcacatttctgatcgaatgcatgttggt-
||||||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||||| |||||||| || ||||| ||| |||| ||||| ||||| |||||| | |||||   | |  |      |  |||  ||        ||     |  | |   |  | |       ||      |||  | ||| | 
TGCGCCATGTTGCGCATGTTACCTTCGATCGGTTCAATGGTTTCCTGGGCTTGCCTGTTGAGTTCGAACCTGAAGTTCCCAGGAGGGCTCCGAGTGCCAGgtgagtgttttt-tccatctttttggaaattgggatatgggttttgcgttttttgctgttgtggttgtgaatttgtggagcttgattgatgggttttgctc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925473|gb|AW831499.1|AW831499
EST:     TTGCCTGTTGAGTTTGAACCTGAGGTCCCCAGAAGGCCTCCTAGTGCTAG                         TGCATCTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTGTCGTATGACTC
genomic: TTGCCTGTTGAGTTTGAACCTGAGGTCCCCAGAAGGCCTCCTAGTGCTAGgtgtgtgttt ... tcacatgtagTGCATCTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTGTCGTATGACTC
EST: gi|4437151|gb|AI523016.1|AI523016
EST:     TTGCCTGTTGAGTTTGAACCTGAGGTCCCCAGAAGGCCTCCTAGTGCTAG                         TGCATCTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTGTCGTATGACTC
genomic: TTGCCTGTTGAGTTTGAACCTGAGGTCCCCAGAAGGCCTCCTAGTGCTAGgtgtgtgttt ... tcacatgtagTGCATCTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTGTCGTATGACTC
EST: gi|209716808|gb|BW682250.1|BW682250
EST:     TTGCCTGTTGAGTTTGAACCTGAGGTCCCCAGAAGGCCTCCTAGTGCTAG                         TGCATCTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTGTCGTATGACTC
genomic: TTGCCTGTTGAGTTTGAACCTGAGGTCCCCAGAAGGCCTCCTAGTGCTAGgtgtgtgttt ... tcacatgtagTGCATCTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTGTCGTATGACTC