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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGCTAGGGTTTCAGTGgtactttctctaatccgaagatattgctatttgattttcctacattttcttctgcttacttcactgattccaattcttactttcttcttctctgcgattttgttcgcag

Basic information

species Glycine max
transcript GLYMA12G31040.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151413165|gb|EV282973.1|EV282973
EST:     AGCTAGGGTTTCAGTG                         GTGTTAGATCTGTACCTGCCTAGCCATTGATTTGGAAAAGTCCAAGCTTCA
genomic: AGCTAGGGTTTCAGTGgtactttctc ... ttgttcgcagGTGTTAGATCTGTACCTGCCTAGCCATTGATTTGGAAAAGTCCAAGCTTCA
EST: gi|208099220|gb|GD898749.1|GD898749
EST:     AGCTAGGGTTTCAGTG                         GTGTTAGATCTGTACCTGCCTAGCCATTGATTTGGAAAAGTCCAAGCTTCA
genomic: AGCTAGGGTTTCAGTGgtactttctc ... ttgttcgcagGTGTTAGATCTGTACCTGCCTAGCCATTGATTTGGAAAAGTCCAAGCTTCA
EST: gi|208276001|gb|GE074295.1|GE074295
EST:     AGCTAGGGTTTCAGTG                         GTGTTAGATCTGTACCTGCCTAGCCATTGATTTGGAAAAGTCCAAGCTTCA
genomic: AGCTAGGGTTTCAGTGgtactttctc ... ttgttcgcagGTGTTAGATCTGTACCTGCCTAGCCATTGATTTGGAAAAGTCCAAGCTTCA
EST: gi|298169144|gb|HO020504.1|HO020504
EST:     AGGGTTTCAGTG                         GTGTTAGATCTGTACCCGCCTAGCCATTGATTTGGAAAAGTCCAAGCTTCA
genomic: AGGGTTTCAGTGgtactttctc ... ttgttcgcagGTGTTAGATCTGTACCTGCCTAGCCATTGATTTGGAAAAGTCCAAGCTTCA
EST: gi|192315372|gb|FK009636.1|FK009636
EST:     AGCTAGGGTTTCAGTG                         GTGTTAGATCTGTACCTGCCTAGCCATTGATTTGGAAAAGTCCAAGCTTCA
genomic: AGCTAGGGTTTCAGTGgtactttctc ... ttgttcgcagGTGTTAGATCTGTACCTGCCTAGCCATTGATTTGGAAAAGTCCAAGCTTCA