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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCACAAGCAAGATGCATGTTGTTGTGGTGCTCAACACGCAATCCTACTGCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttcttttcttttattctcttttgggaaaataataataatcgattataatttcctttgcttcgaatcgcag

Basic information

species Glycine max
transcript GLYMA12G28900.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301802|gb|FG994454.1|FG994454
EST:     GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGTTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|120534155|gb|EH262288.1|EH262288
EST:     GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|254347086|gb|GR856756.1|GR856756
EST:     TCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: TCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|254347085|gb|GR856755.1|GR856755
EST:     GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|120533173|gb|EH261306.1|EH261306
EST:     GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|42723234|gb|CK769133.1|CK769133
EST:     GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|298179078|gb|HO027549.1|HO027549
EST:     GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|151410281|gb|EV280096.1|EV280096
EST:     GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|11413290|gb|BF425301.1|BF425301
EST:     GCAGAGGCCTANAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAAGAGGCTGCTGCTGCNTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|120534084|gb|EH262217.1|EH262217
EST:     GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|151395888|gb|EV265765.1|EV265765
EST:     GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|9205069|gb|BE331293.1|BE331293
EST:     GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|6134669|gb|AW133062.1|AW133062
EST:     GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|151398076|gb|EV267954.1|EV267954
EST:     GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|192306231|gb|FG996845.1|FG996845
EST:     GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGTTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|298166796|gb|HO010235.1|HO010235
EST:     GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|298164410|gb|HO014055.1|HO014055
EST:     GCAGAGGCCTAGAACCTCTTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
EST: gi|21994382|gb|BQ785910.1|BQ785910
EST:     GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAG                         GGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG
genomic: GCAGAGGCCTAGAACCTCCTTCATCTTCTCCTTCCGTCGTTTCCAACAAGgtaggtttct ... cgaatcgcagGGAACAAGGACTTTGAGTTTCAGGAGGCTGCTGCTGCGTCCTTCTCTTGGG