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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGTTTCAACGTCCGCGAGGTCGAGATGGGCACTCGTAGACCTCTTATACTGCAAATGGTCCACGATGCTTCCGCTCTCGAACCCCGTTGCCGCTTCCAGgtccctcatttcgtgctctcttgaattgaattttgaatattctttcaattatccaagtttggcgcattgtttatttcggttgggttttggaatttgaata...

Basic information

species Glycine max
transcript GLYMA12G23480.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G23480.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G010306_T01 (Zea mays), 5'ss of exon 1
CCGTTTCAACGTCCGCGAGGTCGAGATGGGCACTCGTAGACCTCTTATACTGCAAATGGTCCACGATGCTTCCGCTCTCGAACCCCGTTGCCGCTTCCAGgtccctcatttcgtgctctcttgaattgaattttgaatattctttcaattatccaagtttggcgcattgtttatttcggttgggttttggaatttgaata------
||| ||||||||||||||||||||||||||||| ||  | |||||  | || || |||||||||||  |  | || ||||| ||| | ||||| |||||||| | |    |  |  ||  | |  | || |||      | |  |   || ||| |||           | ||||  |        ||  ||||    ||      
CCGCTTCAACGTCCGCGAGGTCGAGATGGGCACCCGCCGTCCTCTCGTCCTCCAGATGGTCCACGACCCCACTGCCCTCGAGCCCAGATGCCGATTCCAGgtgcgtgtgctactattcg-tcgcctagattttc-----tcccgttgcttctcccagtcccatatcgaatctattcggagaacagattaaaattaaggtacggcgg

upper sequence: GLYMA12G23480.1 (Glycine max), 5'ss of exon 1
lower sequence: GRMZM2G063737_T01 (Zea mays), 5'ss of exon 1
CCGTTTCAACGTCCGCGAGGTCGAGATGGGCACTCGTAGACCTCTTATACTGCAAATGGTCCACGATGCTTCCGCTCTCGAACCCCGTTGCCGCTTCCAGgtccctcatttcgtgctctcttgaattgaattttgaatattctttcaattatccaagtttg---gcgcattgtttatttcggttgggttttggaat--ttgaata-----------------------------
||| ||||||||||||||||| ||||||||||| ||  | |||||  | || || ||||| |||||  |  |||| ||||| ||| | ||||| |||||||||| |    ||  | | |||    | | ||||      | |  |   || ||| || |||   |   | |  | | |  |    ||    | | |  ||  ||                              
CCGCTTCAACGTCCGCGAGGTTGAGATGGGCACCCGCCGTCCTCTCGTCCTCCAGATGGTTCACGACCCCACCGCCCTCGAGCCCAGATGCCGATTCCAGgtccgtgtgctca-gatttctctcctaggatttc-----tccccttgcttctcccaggttgagagtctaataatgaatgtgaactggacaagcagttgtttgatgtggtttgttgtgcgcgcggcgcattgcag

upper sequence: GLYMA12G23480.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ36651 (Selaginella moellendorffii), 5'ss of exon 1
CCGTTTCAACGTCCGCGAGGTCGAGATGGGCACTCGTAGACCTCTTATACTGCAAATGGTCCACGATGCTTCCGCTCTCGAACCCCGTTGCCGCTTCCAGgtccctcatttcgtgctctcttgaattgaattttgaatattcttt-caattatccaagtttggcgcattgtttatttcggttgggttttggaatttgaata
  | ||||| ||||||||||| ||||||||||||||| | |||||  | || || ||| |||||||  |  | ||  | || || || |||||  | ||||| |  |   | ||      |  | | |     |  | |||| || || |  |    ||||                                        
TAGGTTCAATGTCCGCGAGGTGGAGATGGGCACTCGTCGCCCTCTCGTGCTCCAGATGATCCACGAGCCAGCGGCGGTGGATCCGCGATGCCGACTGCAGgtactgc---tagtagcaagtgaagtcgctgcctagaaattccttacattcttttgcgtttcag-------------------------------------

upper sequence: GLYMA12G23480.1 (Glycine max), 5'ss of exon 1
lower sequence: EFJ18064 (Selaginella moellendorffii), 5'ss of exon 1
CCGTTTCAACGTCCGCGAGGTCGAGATGGGCACTCGTAGACCTCTTATACTGCAAATGGTCCACGATGCTTCCGCTCTCGAACCCCGTTGCCGCTTCCAGgtccctcatttcgtgctctcttgaattga-attttgaatattctttcaattatccaagtttggcgcattgtttatttcggttgggttttggaatttgaata
  | ||||| ||||||||||| ||||||||||||||| | |||||  | || || ||| |||||||  |  | ||  | || || || |||||  | ||||| |  |   | ||      |  | | |     | |||| || || || |  |    ||||                                        
TAGGTTCAATGTCCGCGAGGTGGAGATGGGCACTCGTCGCCCTCTCGTGCTCCAGATGATCCACGAGCCAGCGGCGGTGGATCCGCGATGCCGACTGCAGgtactgc---tagtagcaagtgaagtcgctgcctagaatttttttacattcttttgcgtttcag-------------------------------------