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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACCGCCGAAGCAGAACCCTAAAACTTTGCTTCAACGATGCAGCACGACGAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagttccctcacctcttcaattttccttttcttacgccctcttcagatttatgttttttttaaatgttattcgttcatttttttttttgtag

Basic information

species Glycine max
transcript GLYMA12G14000.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G14000.1 (Glycine max), 5'ss of exon 1
lower sequence: AT1G23280.1 (Arabidopsis thaliana), 5'ss of exon 1
--ACACCGCCGAAGCAGAACCCTAAAACTTTGCTTC-AACGATGCAGCACGACGAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagttccctcacctcttcaattttccttttcttacgccctcttcagatttatgttttttttaaatgttattcgttcatttttttttttgtag
  | |||    |   |      | || |||  |    || |||||| ||||| ||||| |||||||| || || |||||||| || || ||||||||||||||||| ||    |    || ||| || |    ||   |    |  ||     | |  || ||  |   | |  || ||||  ||||  |||| |||
CTAAACCCTTTAGCTA---TTTTCAAGCTTCACCGGGAAAGATGCAACACGATGAGGTTATATGGCAGGTCATTAGGCACAAGCACTGTAGTTACATGGCCAAgtatgtattttt-tatcctcacttgttagctttcaattttcatttgtagctcaatttgttgatgggtttgttttgttctcttttgcttttctag

upper sequence: GLYMA12G14000.1 (Glycine max), 5'ss of exon 1
lower sequence: Vv17s0000g09220.t01 (Vitis vinifera), 5'ss of exon 2
-ACACCGCCGAAGCAGAACCCTAAAACTTTGCTTCAACGATGCAGCACGACGAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagttccctcacctcttcaattttccttttct---tacgccctcttcagatttatgttttttttaaatgttattcgttcatttttttttttgtag
 | ||   | |      |  ||  ||    | |  || |||||| |||||||| || |||||||| || |||||||||||||| ||||||| |||| ||||||||  |   ||  |  |   |   |   |||||   ||     ||||    |    |||  ||  |  || ||||  |||  | || | || | ||
TATACAAACCAGAGTTTATTCTGGAATAGAGGTGAAA-GATGCAACACGACGAAGTGATATGGCAGGTCATCAGGCACAACCACTGCAGTTTCATGACCAAgtaaacttgatcttccttcgtaccctttgtttctgattatattttctttgagtca--gttgattcaatgtggtattttttcggtgttgtgtt-gcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406980|gb|EV276795.1|EV276795
EST:     GAGGTCATATGGCAAGTTATCAGGCTCAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagttccc ... ttttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
EST: gi|18041381|gb|BM309675.1|BM309675
EST:     GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagttccc ... ttttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
EST: gi|17518730|gb|BM187772.1|BM187772
EST:     GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagttccc ... ttttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
EST: gi|298164306|gb|HO013951.1|HO013951
EST:     GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAA                         AATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG
genomic: GAGGTCATATGGCAAGTTATCAGGCACAACCATTGCAGTTACATGGCCAAgtaagttccc ... ttttttgtagAATTGCGACGGGGAATTTTTGTAGAAACCCTTACAACGTGACTGGGGTTTG